Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0276
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0693 - 26334574-26336121 31 0.67
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 31 0.89
02_04_0362 - 22366668-22367516 30 2.0
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 29 2.7
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 29 3.6
04_04_0143 - 23091613-23092467 29 3.6
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819... 29 3.6
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 29 3.6
11_06_0232 + 21559467-21559532,21559586-21560200 29 4.7
06_01_1082 - 8847795-8848033,8848511-8848724 28 6.2
>11_06_0693 - 26334574-26336121
Length = 515
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 11 PTRKR*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 163
P R+R P +L F+ R C+P+ P SP +S SS P +PL R
Sbjct: 38 PARRR--PLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 593 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 703
GF WT +P K+DN F RE +E L L PTD
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGL-LKLPTD 215
>02_04_0362 - 22366668-22367516
Length = 282
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +2
Query: 335 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCETQ 514
K+ A +A RSRF V R EQ+R + + R +G+ E+ ++L ++ GL++ +
Sbjct: 191 KKQVAQQEAERSRFLVARAEQER-RAAIVRAEGESEA-ARLISEATAAAGTGLIELRRIE 248
Query: 515 RNQYLTLAVQTTPNHNHMAYGANS 586
+ + + +PN +++ G +S
Sbjct: 249 AAKEIAGELARSPNVSYIPAGDSS 272
>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 41 LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 211
L C+ LC+ P + P S +F A++LP P+ A+R++ +++ + S
Sbjct: 815 LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874
Query: 212 *TNSYETT 235
N+ T
Sbjct: 875 SNNNMSLT 882
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 593 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 703
GF+ WT +P K+DN + E +E L L PTD
Sbjct: 171 GFEGAWTQEPLKFDNSYFLELLKGE-SEGL-LKLPTD 205
>04_04_0143 - 23091613-23092467
Length = 284
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/83 (25%), Positives = 43/83 (51%)
Frame = +2
Query: 335 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCETQ 514
K+ A +A RS+F V + EQ+R + + R +G+ ES ++L ++ GL++ +
Sbjct: 190 KKQVAQQEAERSKFLVAKAEQER-RAAIVRAEGESES-ARLISEATAAAGTGLIELRRIE 247
Query: 515 RNQYLTLAVQTTPNHNHMAYGAN 583
+ + + +PN ++ G N
Sbjct: 248 AAREIAAELARSPNVAYVPAGDN 270
>04_01_0623 -
8198301-8198504,8198805-8198907,8199065-8199144,
8199239-8199321,8199593-8199641,8199736-8199801,
8200118-8200167,8200299-8200423,8200568-8200683
Length = 291
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 593 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 703
GF WT P K+DN F +E +E L L PTD
Sbjct: 172 GFDGAWTKDPLKFDNS-YFIELLKENSEGL-LKLPTD 206
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 506 ETQRNQYLTLAVQTTPNHNHMAYGANS 586
E QR Q L+ + +T P +NH ++G+N+
Sbjct: 788 EYQRKQLLSFSQRTVPVNNHSSHGSNN 814
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 89 SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 232
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 608 WTLQPAKYDNDVLFFMYNREYNEALVL 688
W Y DVL F YN+EY++ V+
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVV 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,694
Number of Sequences: 37544
Number of extensions: 320947
Number of successful extensions: 1110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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