Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0276
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 36 0.026
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 32 0.32
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 31 0.98
At4g04190.2 68417.m00595 expressed protein 31 0.98
At4g04190.1 68417.m00594 expressed protein 31 0.98
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 30 1.7
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 29 2.3
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 29 3.0
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 29 3.0
At2g28150.1 68415.m03419 expressed protein 29 3.9
At2g39580.1 68415.m04855 expressed protein 28 5.2
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 28 6.9
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 28 6.9
At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identic... 28 6.9
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac... 28 6.9
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 9.1
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 9.1
At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative / poly... 27 9.1
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd... 27 9.1
At3g13540.1 68416.m01702 myb family transcription factor contain... 27 9.1
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 27 9.1
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 35.9 bits (79), Expect = 0.026
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 7 EPDAQKMKT-VQVILCLFVASLYANETSVSDSKLEDDLYNSI--LVADYDHSVEKSKQIY 177
+ D ++KT VQ I C+ A+ET++ SK DDL I L+ D + +E +Q+
Sbjct: 709 DDDQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVA 768
Query: 178 EDKKSEVITNVVNKLIRNN 234
E+ S + NN
Sbjct: 769 EENSSRAWGKIETDSSSNN 787
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 22 KMKTVQVILCLFVASLYANETSVSDSKL-EDDLYNSILVADYDHSVEKSKQIYEDKKSEV 198
K KT Q +LC+ +++ S + +++ D++ + I+ DYD V+ S I ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457
Query: 199 ITNVVN 216
+TN V+
Sbjct: 458 LTNGVD 463
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 NNIKLMYKRDGLALTLDDENSNDGRLAYG-DGKDKTSPKVSWKFVPLWENNKVYFKIVK 509
++IKL + L DD+ D LA+ G+D TS +SW F L EN +V KI K
Sbjct: 281 SHIKLDTTKYELLNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKIRK 339
>At4g04190.2 68417.m00595 expressed protein
Length = 184
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 455 LEVRSSVGEQQ-GLLQDCETQRNQYLTLAVQTTPNHNHM--AYGANSVEGFKAQWTL 616
L VR E + GL E + + L + T H+ A GA +EGF+ +W+L
Sbjct: 81 LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSL 137
>At4g04190.1 68417.m00594 expressed protein
Length = 184
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 455 LEVRSSVGEQQ-GLLQDCETQRNQYLTLAVQTTPNHNHM--AYGANSVEGFKAQWTL 616
L VR E + GL E + + L + T H+ A GA +EGF+ +W+L
Sbjct: 81 LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSL 137
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 363 DGLALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
D +AL DD+NS +G A GD ++ K+S+K V
Sbjct: 194 DVVALYNDDDNSRNGVTALGDELEERRCKISYKAV 228
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 4 REPDAQKMKTVQVILCLFVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYED 183
+E ++++ Q L + Y + + KLED L SIL +S K ++++
Sbjct: 291 KEEKVRQLERAQRDLDRYTHYHYRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF-- 348
Query: 184 KKSEVITNVVNKLIRNNKM 240
K+ I + VN+L R+ ++
Sbjct: 349 KEYSWIIDAVNRLFRSRRI 367
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 70 YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 249
Y + + KLED L SIL +S K ++++ K+ +T+ VN+L + ++
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410
Query: 250 E*PTSY 267
P ++
Sbjct: 411 SYPFAF 416
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 375 LTLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVKLSVISI 527
LT+D +S + Y D +T ++ WEN+ YFK VK+S +++
Sbjct: 20 LTVDSPDSTSDNIFYYDDTSQTR----FQQEKPWENDPHYFKRVKISALAL 66
>At2g28150.1 68415.m03419 expressed protein
Length = 540
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 106 EDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME*PTS 264
EDDL IL A+ + V K +++++ S+ + +VN +N K +E P+S
Sbjct: 102 EDDL---ILPANGNEYVLKGSELFDESNSDHFSPIVNLATQNMKQIVVEPPSS 151
>At2g39580.1 68415.m04855 expressed protein
Length = 1567
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 581 WPRRPCGYGSGLFELPTSNT 522
W R PC SGL+ +P S T
Sbjct: 392 WKRLPCSNNSGLYNIPGSTT 411
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 369 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 369 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identical
to ascorbate peroxidase 3 [Arabidopsis thaliana]
GI:2444019, L-ascorbate peroxidase [Arabidopsis
thaliana] gi|1523791|emb|CAA66926; similar to ascorbate
peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954
Length = 287
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 593 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 703
GF WT +P K+DN + E +E L L PTD
Sbjct: 171 GFDGPWTQEPLKFDNSYFVELLKGE-SEGL-LKLPTD 205
>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
family protein contains Pfam profile PF00847: AP2 domain
Length = 226
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 92 PTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSY 226
P PN++ + + +TT+ +++ R+RR +S M + Y
Sbjct: 36 PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 80 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 205
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +2
Query: 80 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 205
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative /
polyphosphoinositide-binding protein, putative similar
to polyphosphoinositide binding protein SEC14 homolog
Ssh1p (GI:2739044) {Glycine max}
Length = 341
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 333 ENNIKLMYKRDGLALTLDDENSNDGRLAYGD 425
E+ + R+GLA+++DD S+ LA GD
Sbjct: 310 ESELHKFENRNGLAVSIDDRKSSHETLANGD 340
>At4g00620.1 68417.m00086 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 360
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -3
Query: 428 AIAVGKSAIV---AVLIVQRQSETVALVH 351
A+ +G+S IV A L++QR+ TV+++H
Sbjct: 230 AVVIGRSNIVGMPAALLLQREDATVSIIH 258
>At3g13540.1 68416.m01702 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 249
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 58 VASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVN 216
++S + ++T+V+ + D NSI V +H E Y+DK S + +++N
Sbjct: 163 ISSSHTDDTTVNGG--DGDSKNSINVFGGEHGYEDFGFCYDDKFSSFLNSLIN 213
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 360 RDGLALTLDDENSNDGRLAYGDGKDKTSPKVSWK--FVPLWENNKV 491
R+ +A+ +DDE +G GD K K+S+K F P +N+ +
Sbjct: 123 REVVAIFVDDEYGRNGISVLGDALAKKRAKISYKAAFPPGADNSSI 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,531
Number of Sequences: 28952
Number of extensions: 260877
Number of successful extensions: 990
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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