Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0274
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 29 0.64
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 2.6
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 27 2.6
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 4.5
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.5
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 6.0
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 6.0
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 7.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 7.9
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 7.9
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 7.9
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 464 ALLQNLECGLQFLP*FGEKDANGIQP-LIGSDRASSERFQWYLVPDKNAATSEIFFYIYN 640
++L+N L +L +G D G++P LI + +R+ W+ + F+I N
Sbjct: 27 SILKNAP-SLSWLMKYGGHDNFGLKPPLIATKLEVPKRWFWHFYAFISLLNPLFTFFILN 85
Query: 641 RKFNDPIEINLKEN 682
F PI N+KE+
Sbjct: 86 TNFPIPIFKNIKED 99
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +1
Query: 112 DSVISGDYDHAASIAKRLHT---NNVSELQETISKLISDKIR-NLVDFSYRLGLPDREKS 279
DS+++GD++ A AK + NN Q T +++ K+ L S ++ D E S
Sbjct: 616 DSIVNGDFEKAVLSAKEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENS 675
Query: 280 SPITFQ---YSSDYFTTTELSK 336
S T + S DY +T LS+
Sbjct: 676 SFETIENLIESFDYENSTPLSQ 697
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 136 DHAASIAKRLHTNNVSELQETISKLISDKIRN--LVDFSYRLGLPDREKSS 282
D+AA A ++ + S+++ETI + I ++ ++ L +F + G+P ++S+
Sbjct: 432 DYAAETASKVASKAASKVRETIDETIIERWQDSKLKEFLFLRGVPVPQRST 482
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Frame = +2
Query: 527 NGIQPLIGSDRASS--------ERFQWYLVPDKNAATSEIFFYIY--NRKFNDPIEINLK 676
N I P IG R S ERF + P+ A SE + +R +N PIEI +
Sbjct: 48 NTISPFIGDGRGSDIFNYEYYDERFH-FCRPENIAKQSESLGSVLFGDRLYNSPIEIKML 106
Query: 677 ENSN 688
EN +
Sbjct: 107 ENQD 110
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 119 LYLAIMTTPHLLLNGYIQTTSANFKKLFR 205
LYL+ T HL +G I+ N+K LFR
Sbjct: 54 LYLSEFGTKHLRRHGRIEKKRRNWKGLFR 82
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 82 ISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISK 207
++ E N++ D++ D D AAS+ L + +E +T+SK
Sbjct: 256 VTKELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVSK 297
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 598 VGHQIPLESFAAGSVRAY 545
VG Q+PL S AA S+R Y
Sbjct: 250 VGEQLPLPSSAAASLRGY 267
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 243 FVQTWTTGSREIITDNFPIQFR 308
F QTW + I+ +++PI++R
Sbjct: 381 FAQTWAPAAYVIVGESYPIRYR 402
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +3
Query: 243 FVQTWTTGSREIITDNFPIQFR 308
F QTW + I+ +++P+++R
Sbjct: 383 FAQTWAPAAYVIVGESYPVRYR 404
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 127 GDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLGLPDREKSSPIT 291
G YD+ A+ + SELQ +K++ D I+ L+ Y +P K+ T
Sbjct: 132 GRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDKT 186
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 502 TLIRRKGCQWYSTTNRLGQS 561
TL+ ++G +W S N+LG S
Sbjct: 340 TLVEQEGTRWNSIANKLGTS 359
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 210 DIRQNSQSRRFFVQTWTTGSREIITDN 290
D + + Q+RRFF Q +R + TDN
Sbjct: 294 DTKPSKQARRFFGQKSIVSNRNMPTDN 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,834
Number of Sequences: 5004
Number of extensions: 61411
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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