Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0274
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    32   0.51 
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    30   2.0  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    29   4.7  
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     28   6.2  
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     28   6.2  

>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 563 WLCPSLLVVEY--HWHPFRRIKVGIGVRIPNFEVELVALPQWLEYPTAPHVSIIR 405
           WLC S ++ +   HW P  +++         F+VEL  LP W+     P++S +R
Sbjct: 757 WLCESTMIWQGWDHWEPPPQLR-----EFCIFDVELARLPAWVNSMCVPYLSELR 806


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 97  NKQLYDSVISGDYDHAASIAKRLHTNNVS 183
           +++ +D++++GD+D A    K LHTN  S
Sbjct: 34  SREFHDALVAGDFDRARVHPKFLHTNATS 62


>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 363  IKLTPGQNKAIINISDNTNVRSSWVFKPLWESNKL 467
            + LTP  N +II I  NT+V   W  K L  ++++
Sbjct: 1823 LNLTPSCNHSIITIGGNTDVELFWNAKDLLSASRV 1857


>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 470 VELVALPQWLEYPTAPHVSIIRDIYYCLILPRCQLY*ITIFRVRYFDSSV 321
           V L +LP++L+ P   HV  I+ +Y+  +LP    + I +  + + D S+
Sbjct: 758 VHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNFPIDLPYLSFLDLSI 807


>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 199 ISKLISDK--IRNLVDFSYRLGLPDREKSSPITFQYSSDY 312
           + KL++D+  I   V+FS RL LPD +  +PI  Q S  Y
Sbjct: 467 LKKLVNDRRYIELEVEFSSRLKLPDFKIRAPILRQASEAY 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,258
Number of Sequences: 37544
Number of extensions: 343002
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)