Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0274
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_25055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)                   28   6.4  
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = +1

Query: 136 DHAASIAK--RLHTNNVSELQETISK-----LISDKIRNLVDFSYRLGLPDREK 276
           DH  ++AK  + H N ++EL ETI K     + S+K R L +  + + L  REK
Sbjct: 385 DHQKNLAKLKKAHQNKITELTETIKKAEHKAVESEKQRKLENEKHSMELEAREK 438


>SB_25055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 225 SQSRRFFVQTWTTGSREIITDNFPIQFRLFYNDRAIKITD 344
           S++RR     W+  +RE +  +FP Q   F ++RAI + D
Sbjct: 11  SRNRRLSASFWSDSAREGVCGSFPSQDFGFRHERAIVLLD 50


>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +1

Query: 112 DSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLGLPDREKSS 282
           +++I+ D D+       LH NN +   E  + + + +I  +   +Y+  LPD   ++
Sbjct: 85  NNIINNDNDNNNHKHSHLHNNNNNNDDEKTTTITTARITTITSTTYQQQLPDNNNNN 141


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 136 DHAASIAKRLHTNNVSELQETISKLISDKIR 228
           +H     +RLH   VS+L + ISKL S+K R
Sbjct: 738 EHKLKEMQRLHGQEVSKLSKRISKLESEKRR 768


>SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)
          Length = 116

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 402 ISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSYLDSA 515
           + +  + RS    K L ++NK+  +I+N D+N+Y++ A
Sbjct: 5   VKEFNDYRSKMNEKLLADNNKVIKRIFNVDTNAYMEGA 42


>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +3

Query: 282 TDNFPIQFRLFYNDRAIKITDAKYGYSIKLTPGQNKAIINISDNTNVRSSWVFKPLWESN 461
           T    +  + +Y  RA+  T  ++G+S++  P  +K+   +S + N     + + L   N
Sbjct: 166 TSGVQLPVKAYYYKRAVSSTCDRFGHSLRQKP-PSKSSSELSIDANKEQRELIQTLENKN 224

Query: 462 KLYFK 476
           +L  K
Sbjct: 225 RLLLK 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,561
Number of Sequences: 59808
Number of extensions: 435444
Number of successful extensions: 1508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)