Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0274
         (702 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122233-1|AAM52745.1|  418|Drosophila melanogaster RE67845p pro...    29   8.1  
AY122089-1|AAM52601.1|  160|Drosophila melanogaster GH03826p pro...    29   8.1  
AE014134-2138|AAF53149.1|  525|Drosophila melanogaster CG6766-PA...    29   8.1  
AE013599-959|AAM71038.1|  160|Drosophila melanogaster CG12744-PB...    29   8.1  
AE013599-958|AAF58881.1|  160|Drosophila melanogaster CG12744-PA...    29   8.1  

>AY122233-1|AAM52745.1|  418|Drosophila melanogaster RE67845p
           protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 192 RNYFEVDIRQNSQSRRFFVQTWTTGSREIITDNFPIQFRLFYND--RAIKITDAKYGY-S 362
           R Y E    +N + + +++  WT    EI+T  +    +       +++KI + +Y Y  
Sbjct: 120 RQYHEEREGKNVKFQEYYLGKWTDEKMEILTKAWQADIKAGVKPKYKSLKIDNTRYPYFE 179

Query: 363 IKLTPGQNKAIINISDNTNVR 425
           ++ + G    IIN    T VR
Sbjct: 180 MEYSDGTMCDIINAPRTTMVR 200


>AY122089-1|AAM52601.1|  160|Drosophila melanogaster GH03826p
           protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 605 HFCRAPNTTGIFRCWLCPSLLVVEYH 528
           H    PNT G F+C LC  + +++ H
Sbjct: 64  HEAHVPNTEGHFQCQLCDKVFLLQDH 89


>AE014134-2138|AAF53149.1|  525|Drosophila melanogaster CG6766-PA
           protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 192 RNYFEVDIRQNSQSRRFFVQTWTTGSREIITDNFPIQFRLFYND--RAIKITDAKYGY-S 362
           R Y E    +N + + +++  WT    EI+T  +    +       +++KI + +Y Y  
Sbjct: 120 RQYHEEREGKNVKFQEYYLGKWTDEKMEILTKAWQADIKAGVKPKYKSLKIDNTRYPYFE 179

Query: 363 IKLTPGQNKAIINISDNTNVR 425
           ++ + G    IIN    T VR
Sbjct: 180 MEYSDGTMCDIINAPRTTMVR 200


>AE013599-959|AAM71038.1|  160|Drosophila melanogaster CG12744-PB,
           isoform B protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 605 HFCRAPNTTGIFRCWLCPSLLVVEYH 528
           H    PNT G F+C LC  + +++ H
Sbjct: 64  HEAHVPNTEGHFQCQLCDKVFLLQDH 89


>AE013599-958|AAF58881.1|  160|Drosophila melanogaster CG12744-PA,
           isoform A protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 605 HFCRAPNTTGIFRCWLCPSLLVVEYH 528
           H    PNT G F+C LC  + +++ H
Sbjct: 64  HEAHVPNTEGHFQCQLCDKVFLLQDH 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,823,005
Number of Sequences: 53049
Number of extensions: 625471
Number of successful extensions: 1684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)