BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVm0274 (702 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 29 3.2 AF016436-1|AAC25897.3| 292|Caenorhabditis elegans Hypothetical ... 29 4.3 AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase prot... 27 9.8 AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 27 9.8 >Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical protein F01G10.5 protein. Length = 824 Score = 29.1 bits (62), Expect = 3.2 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +1 Query: 148 SIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLGLPDREKSSPITFQ 297 S+A+ L N +E E + +LI+ R V FS+ L + K +PI F+ Sbjct: 658 SLAEFLSKGNDNETLEEMMRLIAQTPRKSVAFSFDLDEDETLKGTPIGFR 707 >AF016436-1|AAC25897.3| 292|Caenorhabditis elegans Hypothetical protein F38H12.5 protein. Length = 292 Score = 28.7 bits (61), Expect = 4.3 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%) Frame = -2 Query: 182 LTLFVCSRLAIDAAW----S*SPDITLSY----NCLLYSALIVWAKNKSAIKTSFF 39 +T+F C++L +D W SPD+TL Y +LYS I++ I T+ F Sbjct: 18 ITIFFCAKLLLDIYWFKTLKRSPDLTLFYFRFLMDILYSITIIFFLLSILITTTSF 73 >AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase protein 1, isoform b protein. Length = 328 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 133 YDHAASIAKRLHTNNVSELQETI 201 YD+AA IAK H N + +QE + Sbjct: 283 YDNAAKIAKTAHKNGTTLVQEAV 305 >AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein 1, isoform a protein. Length = 501 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 133 YDHAASIAKRLHTNNVSELQETI 201 YD+AA IAK H N + +QE + Sbjct: 456 YDNAAKIAKTAHKNGTTLVQEAV 478 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,685,923 Number of Sequences: 27780 Number of extensions: 332121 Number of successful extensions: 1018 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1018 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1624019012 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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