Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0274
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.92 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 128 PDITLSYNCLLYSALIVWAKNKSAIKTSFFISLAVFI 18
           P + +S+ C+L   L   A  K  +  S  +SL VF+
Sbjct: 243 PTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFL 279


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 330 IKITDAKYGYSIKLTPGQNKAIIN----ISDNTNVRSSWVFKPLWESNKLYFKIWNADSN 497
           +++ D +Y   +  T G  +A+ N     ++  N+RS+    P     K  +++WN    
Sbjct: 135 LQVFDCRY---VTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLI 191

Query: 498 SY 503
           SY
Sbjct: 192 SY 193


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 390 AIINISDNTNVRSSWVFKPLWESNKLYFKIW 482
           A++  S    V   W+F  LW S  L   +W
Sbjct: 117 AVLPFSATWEVFKVWIFGDLWCSIWLAVDVW 147


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 588 WCPTKMPLRRRYFFIFTIASLTILSRLTSKRTAMMSNS 701
           W    M L R + +IFTIAS+     +  +  A+  N+
Sbjct: 478 WGFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNT 515


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 485 IPNFEVELVALPQWLEYPT 429
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 485 IPNFEVELVALPQWLEYPT 429
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,064
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)