Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0274
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    34   0.10 
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   2.3  
At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to a...    29   2.3  
At3g11440.1 68416.m01395 myb family transcription factor (MYB65)...    29   3.0  
At1g53080.1 68414.m06010 legume lectin family protein                  29   3.9  
At2g23630.1 68415.m02819 multi-copper oxidase type I family prot...    28   6.9  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   9.1  
At2g18780.1 68415.m02186 F-box family protein contains F-box dom...    27   9.1  

>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 542 VVEYHWHPFRRIKVGIGVRIPNFEVELVALPQWLEYPTAPHVSI 411
           VV + + P ++ +  IG R PN  + +  +  + EYP +P+V++
Sbjct: 172 VVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAV 215


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 605  HFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRRIKVGIG 492
            H C+A N   + RC L P+    ++H  P R++ +  G
Sbjct: 1381 HICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLSDG 1418


>At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to
           alpha-expansin precursor GI:4027891 from [Nicotiana
           tabacum]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/90 (23%), Positives = 37/90 (41%)
 Frame = +3

Query: 192 RNYFEVDIRQNSQSRRFFVQTWTTGSREIITDNFPIQFRLFYNDRAIKITDAKYGYSIKL 371
           RNYFE+ +  N        + W  GS+    +     +   Y      +      + ++L
Sbjct: 169 RNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTY-LNGQSLSFKVQL 227

Query: 372 TPGQNKAIINISDNTNVRSSWVFKPLWESN 461
           + G  KA +N+     V S+W F   ++SN
Sbjct: 228 SDGSIKAALNV-----VPSNWRFGQSFKSN 252


>At3g11440.1 68416.m01395 myb family transcription factor (MYB65)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 553

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 560 LCPSLLVVEYHWHPFRRIKVG-IGVRIPNFEV-ELVALPQWLEYPTAPHVSIIRDI 399
           + P    V Y  HP  +   G + + +P+F+  E  A  QW   P+ PH  ++  +
Sbjct: 302 MVPDSHTVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSV 357


>At1g53080.1 68414.m06010 legume lectin family protein
          Length = 283

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 291 FPIQFRLFYNDRAIKITDAKYGYSIKLTPGQ--NKAIINISDNTNVRSSWVFKPLWESNK 464
           F ++F +F + R   I D   G +I     +   KA   I   T  ++ W+FK +  S+ 
Sbjct: 150 FAVEFDVFQDKRFGDINDNHVGVNINSVNSKVSEKAGYWIQTRTRGKNQWLFKEVKLSSG 209

Query: 465 LYFKIWNADSNS 500
             +K W    NS
Sbjct: 210 DNYKAWIEYKNS 221


>At2g23630.1 68415.m02819 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 541

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 324 RAIKITDAKYGYSIKLTPGQNKAIINISDNT---NVRSSWVFKPLWESNKLYFKIWNADS 494
           R   + DA   ++ ++ P    +I+   DN    N+RS  ++   +   +LY ++WN + 
Sbjct: 459 RGYNLVDAVSRHTFQVYPMSWTSILVSLDNKGMWNLRSQ-IWSRRYLGQELYVRVWNNEK 517

Query: 495 NSYLDSAKRMPMVF 536
           + Y +S   + ++F
Sbjct: 518 SLYTESEPPVNVLF 531


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 411 NTNVRSSWVFKPLWESNKLYFKIWNA 488
           +T  RS W++ P  E N LYF  +NA
Sbjct: 520 STRWRSLWLWLPCLELNSLYFPDFNA 545


>At2g18780.1 68415.m02186 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -3

Query: 340 VILIALSL*NNRNCIGKLSVMISLDPVVQVCTKNRRDCEFCLISTSK 200
           V L +L+L  N N I +L  ++SLD   QV   N   CE  L+ T+K
Sbjct: 76  VSLFSLNL-LNPNPIERLGQLVSLDGGAQVDISNIFHCEGFLLCTTK 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,095
Number of Sequences: 28952
Number of extensions: 301186
Number of successful extensions: 936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)