Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0273
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    31   0.21 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   4.4  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   4.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.8  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 119 FLLINIKYFVHVPLD*MNCLYFILVVYLSISLYVFH 226
           FLL+N+K  +HV  +    LYFI+ +Y+ I+L VF+
Sbjct: 428 FLLLNLKESIHVWKE----LYFIVHIYILIALAVFN 459


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 454 KSTITYEILGK*NLVNQQQHNIIELFILPLP*FVNNIFHHNKMKQNEKNRYKDELVTSQK 275
           K T+ Y+I    N V +  + + E  I  L   +N+    N+   NE+N  K+ L TS+ 
Sbjct: 567 KQTVQYQIS---NAVKENSNTLSEQ-IKNLESELNSSKIKNESLLNERNLLKEMLATSRS 622

Query: 274 GVLTH 260
            +L+H
Sbjct: 623 SILSH 627


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 133 YKIFCTCST*LNELSVFYIGSISLYLAICFP*KKYVLYSLCRYVS---KHLSVRSPTH 297
           + +   C      LS F +    +Y  +C     Y+LY   ++V    K LSVRSP H
Sbjct: 210 FLVIFICYIFFTVLSFFNVPDAIVYSKLCRGLMFYLLYPFGQHVRHKVKRLSVRSPAH 267


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 50  ISIISRRAETRFDKMFSLNKTDYFLLINIKYFV 148
           +++++R A+T F   + LNK +  LLI I +F+
Sbjct: 1   MALLNRLAKT-FSPYYGLNKVEQKLLIKIDWFI 32


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 238 VLYSLCRYVSKHLSVRSPTHLYIYFFHFVSFYCD 339
           ++Y LC+ +SK +  +      + +FH    Y D
Sbjct: 212 IIYGLCQSLSKDIPTKDALDTVLKYFHSFGMYGD 245


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 454 SCFYRIYFQINALVKNIHNF 513
           SCFY+ Y++  +   N+ NF
Sbjct: 318 SCFYKSYYEYRSWFHNVTNF 337


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 646 YIEEMHFSETFRRLPLGQFDRSFSPFNFY 560
           Y E ++FSE +RRL +    ++ +  NF+
Sbjct: 450 YAELLNFSEQYRRLSIKNATKNLTKDNFF 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,095
Number of Sequences: 5004
Number of extensions: 55981
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)