Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0273
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          32   0.38 
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                29   4.7  
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             28   6.2  

>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 217 CFP*KKYVLYSLCRYVSKHLSVRSPTHLYIYFFHFVSFYCD 339
           CFP + + LY+LCR + K L+V  P  L    +  V   CD
Sbjct: 418 CFPEEGFALYTLCRPLCKQLAVHCPDLLQTPSYIRVISECD 458


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 41  GIVISIISRRAETRFDKMFSLNKTDYFLLINIK 139
           G + S   R   T FDK FSLN  D FL + ++
Sbjct: 233 GWLASPYGRSETTLFDKTFSLNANDKFLTVIVR 265


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 65  RRAETRFDKMFSLNKTDYFLLINI 136
           RR E  F+ +F++N   +FLLIN+
Sbjct: 132 RRTEDGFEMIFAVNHLSHFLLINL 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,257
Number of Sequences: 59808
Number of extensions: 355536
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)