Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0273
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical
           protein T06E6.11 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 115 LFLINKYKIFCTCST*LNELSVFYIGS--ISLYLAICFP*KKYVLYSLCRYV 264
           + LIN+ +IF TC      +    I +  +SL+L  C    +Y+L+  CR V
Sbjct: 99  VILINQDRIFATCFPISYHIHRHKISTSDVSLFLLACALFNQYILFGYCRNV 150


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 86  DKMFSLNKTDYFLLINIKYFVHVPLD*MNCLYFILVVYLSISLYVFHKKNTFCIHYVDMC 265
           DK     K+ +F ++ I+ FV      ++ L   +++Y+S +     K  + C  YVD C
Sbjct: 104 DKRALFKKSTFFKILLIQCFVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSLYVDYC 163

Query: 266 QNTF 277
            N F
Sbjct: 164 SNFF 167


>AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical
           protein Y116F11A.3 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 451 FSCFYRIYFQINALVKNIHNF*VCGNA 531
           FS FYRIY+ IN  +++     +CGN+
Sbjct: 81  FSFFYRIYYAINFPIRDYICVPICGNS 107


>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 229 KKYVLYSLCRYVSKHLSVRSPTHLYIYFFHFVSFY 333
           KK++L  L     KH+ +++P H    FF++  F+
Sbjct: 22  KKHILRCLGSLDGKHIRIKAPPHSGSLFFNYKHFF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,166
Number of Sequences: 27780
Number of extensions: 302827
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)