Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0273
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.3  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 352 NNIFHHNKMKQNEKNRYKDELVTSQKG--VLTHIYIVNTKRIFFMENI 215
           N+     K+      +YK+ ++ +      L H Y +  K I+F+E+I
Sbjct: 180 NHALIFGKLDTKTSGKYKEYIIPANYSGWYLNHDYNLENKLIYFIEDI 227


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 32  LTYGIVISIISRRAETRFDKMFSLNKTDYFLLINIKYFVHVPLD*MNCLYFILV 193
           +T  + +S IS  + T   K+      D+FLL++  Y +   L+     YF  V
Sbjct: 281 ITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIATLLEFAGVHYFTKV 334


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 178 VFYIGSISLYLAICF--P*KKYVLYSLCRYVSKHLSVR 285
           + Y+ SI +YL  CF       + Y+   Y++K + +R
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 178 VFYIGSISLYLAICF--P*KKYVLYSLCRYVSKHLSVR 285
           + Y+ SI +YL  CF       + Y+   Y++K + +R
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 193 SISLYLAICFP*KKYVLYSLCR 258
           S+  YLAIC P + Y +  L R
Sbjct: 136 SMERYLAICHPLRVYTISGLKR 157


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 178 VFYIGSISLYLAICF--P*KKYVLYSLCRYVSKHLSVR 285
           + Y+ SI +YL  CF       + Y+   Y++K + +R
Sbjct: 216 ISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 253


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 346 IFHHNKMKQNEKNRYKDELVTSQKGVLTHIYIVNTKRI 233
           I ++N  K N  N+Y        K +    YI+N ++I
Sbjct: 90  IHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 178 VFYIGSISLYLAICF 222
           + Y+ +I +YL +CF
Sbjct: 298 ISYVKAIDIYLVMCF 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,973
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)