Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0272
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    30   0.016
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.5  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   9.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 629 SKSRLFYKYLNFSHRDLYNLGRVVLVVLCFSRVLLPGHSFLQPCYWCLHSENNSLQPITG 450
           SKSR+FY+ +NF    +  L  VV + + FS  ++P     +  YW LH     +  I  
Sbjct: 65  SKSRVFYENVNFQFGSILALFGVVQIYI-FSGFIVPSGVVYKIGYW-LH----QICHICE 118

Query: 449 QFTEREICRVIH-FVLHYQSKNREISGRNV 363
             T   +C V+  F + Y+  N+ +    +
Sbjct: 119 LHTIFLVCNVLTVFKIRYKDLNKALESSKI 148


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +3

Query: 81  DYIEMKYFKINTPMDVNRILFIAR 152
           D++ +K+F +   ++   +LF+ R
Sbjct: 311 DHLAVKHFSVEGQLEFRALLFVPR 334


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 438 TGDLPCDPL 412
           TG+ PCDP+
Sbjct: 53  TGEAPCDPV 61


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 350 VNRKTPGA*LDFCL 309
           VNRK PG  ++ CL
Sbjct: 101 VNRKMPGPSVEVCL 114


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 KYIYNLVF*YLIFNVGLGTRCY*EC 301
           ++I+ L+F YLI  VG   R   +C
Sbjct: 120 QWIWLLIFAYLIPEVGTWIRAVRKC 144


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 KYIYNLVF*YLIFNVGLGTRCY*EC 301
           ++I+ L+F YLI  VG   R   +C
Sbjct: 120 QWIWLLIFAYLIPEVGTWIRAVRKC 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,047
Number of Sequences: 336
Number of extensions: 3321
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)