Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0272
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    29   2.7  
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588...    28   6.2  
02_02_0108 + 6825710-6825903,6826159-6826282                           28   6.2  
08_02_1239 + 25491034-25492378,25493719-25494575                       28   8.2  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    28   8.2  

>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 530 LLPGHSFLQPCYWCLHSENNSLQPITGQFTEREICRVIHFVLHYQSKNREISGRNV 363
           ++ G SF  P +WC H +   L+  T +  +  +CR      H +   REIS  ++
Sbjct: 361 IMAGFSFTCPVHWCFHCK--GLEDRTQEPLQFAVCRRCPRSYHRKCLPREISFEDI 414


>08_01_0678 +
           5878291-5878461,5879722-5879984,5881658-5881729,
           5881807-5881878,5882092-5882166,5882443-5882517,
           5883623-5883667,5883767-5883831,5883919-5884203,
           5884234-5884298,5884435-5884636,5884735-5884905,
           5885237-5885355,5886699-5886909,5887007-5887238,
           5887325-5887475,5887547-5887945
          Length = 890

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -1

Query: 494 WCLHSENNSLQ---PITGQFTEREICRVIHFVL 405
           WCLH     L+   P   +F + E+ RVI+ +L
Sbjct: 760 WCLHENKQPLEILDPKLTEFNQEEVMRVINVIL 792


>02_02_0108 + 6825710-6825903,6826159-6826282
          Length = 105

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 547 CVLAEFYYPATPSSSRATGACIQRTIHC 464
           C+L   +YP+T  S R     + R++HC
Sbjct: 42  CMLLRQFYPSTLFSCRRLSLLVSRSLHC 69


>08_02_1239 + 25491034-25492378,25493719-25494575
          Length = 733

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 584 DLYNLGRVVLVVLCFSRVL--LPGHSFLQPCYWCLHSENNSLQPI 456
           D+Y  G VVL V+C  R    + G  FL    W LH +   L  +
Sbjct: 577 DVYAFGAVVLEVVCGRRPRCDIDGFCFLVDWVWRLHRDGRVLDAV 621


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 410 VLHYQSKNREISGRNV*EYSVNRKTPGA*LDFCLP*STLNNISF 279
           V+HYQ   R    RN   YSV    P   + +    S+  N+SF
Sbjct: 284 VVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSF 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,194
Number of Sequences: 37544
Number of extensions: 334720
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)