Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0272
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12355| Best HMM Match : IncA (HMM E-Value=2)                        29   2.7  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_47953| Best HMM Match : DUF911 (HMM E-Value=9.5)                    28   8.4  

>SB_12355| Best HMM Match : IncA (HMM E-Value=2)
          Length = 225

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 646 LKIIMFLKADFFINI*IFLTVTFTILVEWS*SSCVLAEFYYPATPSSSRATGACIQ 479
           + +I+ +     I I + +T+T TI V  + +  +  EF  P   +SSRA    ++
Sbjct: 66  ITVIITITVIITITITVIITITITITVIITITVIITIEFLQPGGSTSSRAAATAVE 121


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 148  LGVSKRAHAQPAVKWYLDTKHT 213
            L V+ RA+ +P V WY D KHT
Sbjct: 2471 LKVTLRANPKPQVIWYKDGKHT 2492


>SB_47953| Best HMM Match : DUF911 (HMM E-Value=9.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 571 LVEWS*SSCVLAEFYYPATPSSSRATGACIQ 479
           L  W   SCV  EF  P   +SSRA    ++
Sbjct: 104 LYSWMTLSCVFIEFLQPGGSTSSRAAATAVE 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,584,993
Number of Sequences: 59808
Number of extensions: 406499
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)