Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0272
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 581 LYNLGRVVLVVLCFSRVLLPGHSFLQPCYWC 489
           LY+LG+V ++ +  +R++    S ++  Y C
Sbjct: 164 LYSLGQVFMLCIFGNRLIEESSSVMEAAYSC 194


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 1  HCRHYLLFHGRNRQGGSGTHPR 66
          H RH LLF+ R  +  S  H +
Sbjct: 7  HYRHILLFYFRKGKNASQAHKK 28


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 104  KIFHFNIVAFVSPRGWVPLPP 42
            ++FH+++V FVS    + L P
Sbjct: 1032 RLFHYSVVPFVSNHDILNLRP 1052


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,989
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)