Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0272
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su...    28   5.2  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    28   6.8  

>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
           subunit family protein contains Pfam profile PF04189:
           Eukaryotic initiation factor 3, gamma subunit
          Length = 446

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 587 RDLYNLGRVVLVVLCFSRVLLPGHSFLQPCYWCLHSENNSLQPITGQFTE 438
           +D + + + VL +L +S      H +LQP   C+H        I  Q TE
Sbjct: 362 QDPWIVAKDVLPLLSYSAPFAIYHQYLQPLATCMHKLQQGKMAINLQITE 411


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 680  IHARCQGLKG*SQNYYVSKSRLFYKYLNFSHRDLYNLGRVVLVV 549
            I+ RC GL      +      LFY  LN +   L N+GR +L++
Sbjct: 1092 INERCLGLDHPDTAHSYGNMALFYHGLNQTELALQNMGRALLLL 1135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,847
Number of Sequences: 28952
Number of extensions: 278609
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)