Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0271
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.50
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.88
06_01_0350 + 2534422-2535615 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.0
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 30 2.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.7
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 3.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.7
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.7
07_03_0078 - 13147741-13148913 28 6.2
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.2
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 8.2
10_07_0134 + 13289641-13290216,13290435-13290914 28 8.2
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.2
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 8.2
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 443 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 264
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 464 TNIDQTRH------RPHPLPVQTRHAPVLRANP 384
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 159 PWNSNAQAEKKTLPGPLGGVFRP 91
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 16 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 180
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 257 SSXEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 84
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 83 LPRRTLVFKDEGTI 42
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 345
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 363 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILI*CGSKTV 521
W R G R+G ++ G+ R VPG+V R L + +V ++ G KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 428 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 315
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 440 RPHPLPVQTRHAPVLRANPYSEVTDP 363
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 570 SGPAFSGLPRIFLAVSRVGFVSCAI 644
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 466 ARTSTRPGTGRIRFPSKPDTPRSSE 392
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 482 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 309
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 308 GDLLR 294
D R
Sbjct: 61 NDCPR 65
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 590 AGERGSGSSPKRKTIFASVILNIYSF*AALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTR 411
A G GSS +++ + LN+ A+ +N + + N+D +R P P P
Sbjct: 201 AAAGGGGSSCRQEAASELINLNVKETEASC---SNRSENSSEINLDISRPAPPPPPPPAN 257
Query: 410 HAPVLRANPY 381
+PV R P+
Sbjct: 258 ESPVNRGIPF 267
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 454 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 368
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 320 ALHLGDLLRIWVRTGATSPRTSSXEFSRSAESIRTPPQMRCSSRSEP 180
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,803,797
Number of Sequences: 37544
Number of extensions: 471011
Number of successful extensions: 1683
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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