Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0271
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.2  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.9  
At5g42370.1 68418.m05159 expressed protein                             29   3.9  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   3.9  
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea...    28   5.2  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.2  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   6.8  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   6.8  
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P...    27   9.0  
At5g22390.1 68418.m02612 expressed protein                             27   9.0  
At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identic...    27   9.0  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 448 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 353
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 235 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 101
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 174 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 64
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 37  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 168
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to guanine nucleotide-binding protein beta 5
           (GI:1001939) [Mesocricetus auratus]
          Length = 425

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 211 GGVRILSADLENSXEDVRGDVAPVRTH 291
           GG+++ S + ++S   +R DV+P RTH
Sbjct: 12  GGLKVESGEQKSSWPTMRFDVSPYRTH 38


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 230 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 132
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g56500.1 68418.m07051 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 597

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 257 SSXEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 87
           S+   + S  S   PP  R SS     + S  F  T+++ Q++  FP + AA   HF
Sbjct: 3   STFSATSSMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 ERSGKSFLFCLSVRVPWNPIEG 174
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identical
           to beta-expansin [Arabidopsis thaliana]
           gi|2224913|gb|AAB61709; similar to SP:O04701 major
           pollen allergen, Bermuda grass [Cynodon dactylon];
           beta-expansin gene family, PMID:11641069
          Length = 271

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = -3

Query: 311 LGDLLRIWVRTGATSPRT-SSXEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQ 135
           L D+     R GA SP      E   +   +R   +  CS R+   + +       + + 
Sbjct: 66  LVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKA 125

Query: 134 KRKLFPDLSAASSGHFGLPRRTLVFKDEGTI 42
           K   F DLS A+ GH  +P    V ++ G +
Sbjct: 126 KHTHF-DLSGAAFGHMAIPGHNGVIRNRGLL 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,666
Number of Sequences: 28952
Number of extensions: 348066
Number of successful extensions: 1043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)