Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0269
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   3.8  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   3.8  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    25   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   3.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   5.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   8.8  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    23   8.8  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 153 GYLKRVIVTPAVYPRLLEFLHVDIQST 73
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 147  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 55
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 PRHLISDAHEWINEIPTVPIYYLAKPQP 242
           P  LI+D  + I ++PT PIY +A   P
Sbjct: 303 PASLINDLLD-IKKVPTKPIYDMASEYP 329


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 NEIPTVPIYYLAKPQP 242
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 PTVPIYYLAKPQPRERAGRISGERR 278
           PT P     +P+PRERA   +G RR
Sbjct: 97  PTAP--RAGRPEPRERASADAGYRR 119


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 168 LISDAHEWINEIPTVPIYYLAKPQPRERAG 257
           L S AH+ ++++P VP  +   P P+  +G
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSG 778


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 162  EAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGH 34
            E++G L RV++ P     ++EFL  DI   G+ S  +   EGH
Sbjct: 895  ESYGKLYRVVLHPEHEGAVVEFL--DIHDAGKASLAL---EGH 932


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 235 HSQGNGLGESAGKEDPVELDSCLL 306
           HS+  G   S    +P+ LDS LL
Sbjct: 386 HSEAGGSDTSQTVSEPISLDSMLL 409


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 156 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGH 34
           FG+++ V    A + RL+   H  +    +   CV+T + H
Sbjct: 471 FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNH 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,636
Number of Sequences: 5004
Number of extensions: 22194
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)