Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0269
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   0.49 
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   0.65 
04_03_0094 - 11113279-11114469                                         27   3.5  
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821           27   4.6  
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496...    26   6.1  
01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093           26   6.1  
11_05_0084 + 18962892-18963383                                         26   8.0  
08_02_0478 + 17621678-17623768                                         26   8.0  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 171 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 70
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 147  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRE 248
            G+  PR +  D  EW N  PT+   ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 180 AHEWINEIPTVPIYYLAKPQPRERAGRISGER 275
           +  W N    VP+  L  P+  ER G +SG++
Sbjct: 37  SRRWRNVHAAVPVVDLVDPKKGERWGNVSGQK 68


>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
          Length = 998

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 168 DDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRYAL 22
           D++  G+L+R ++ P    R +  L V++QS   ++  V+ R   RY L
Sbjct: 99  DEDLAGWLRRTVLRPLTTLRAMYKLAVEVQSLKARALMVSERR-LRYKL 146


>10_02_0074 -
           4965688-4966638,4966877-4966906,4968656-4968927,
           4969092-4969329
          Length = 496

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 147 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERA 254
           GS    H+  D H+W  E  T+P        P E A
Sbjct: 461 GSNQGLHICKDGHQWPLEESTMPTVECVLQHPGESA 496


>01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093
          Length = 324

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 213 GQWESR*SIHARH*LDDEAF--GYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTRE 40
           G W  R     RH   DE    G+L+R ++ P    R +  L +D+QS   ++  V+ R 
Sbjct: 35  GFWHHR----GRHYRGDEGLVAGWLRRTVIQPLETLRAMHKLALDVQSLKARALKVSERR 90

Query: 39  GHRYAL 22
             RY L
Sbjct: 91  -LRYKL 95


>11_05_0084 + 18962892-18963383
          Length = 163

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 147 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQ 239
           G   PRH    A   I+ +P+  I+Y AKP+
Sbjct: 114 GHGAPRHAAEGAIVAIDLLPSASIHYRAKPR 144


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -2

Query: 207 WESR*SIHARH*LDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSH 58
           W +    +  + +DDEA  +  R++    V+P +  F  + I S  +  H
Sbjct: 263 WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI-ISSCSEHGH 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,883
Number of Sequences: 37544
Number of extensions: 162715
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)