Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0269
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   6e-08
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 47   4e-06
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   4e-06
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   5e-05
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   6e-04
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.39 
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)                   27   3.6  
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)                   26   6.3  
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)                        26   8.3  

>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 156 MPRHLISDAHEWINEIPTVPIYYLAKP 236
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -1

Query: 85  HSEHWAEITLRQHPRGPSLCFVLIRQS 5
           ++EHWAEITLRQH   PS CFVLI+QS
Sbjct: 48  NNEHWAEITLRQHRFRPSQCFVLIKQS 74


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 73  SALNVNVKKFKQARVNGGSNYDSL 144
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +1

Query: 76  ALNVNVKKFKQARVNGGSNYDSL 144
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +1

Query: 70  PSALNVNVKKFKQARVNGGSNYDS 141
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 273 FPR*FSQPVPLAVVSLDSR 217
           FP   ++PVPLAVVSLDSR
Sbjct: 112 FPADCAKPVPLAVVSLDSR 130


>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 6   DCLIKTKHSDGPRGC*RNV 62
           DCL K  HS+G RGC R +
Sbjct: 302 DCLKKVFHSEGLRGCFRGM 320


>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 189 WINEIPTVPIYYLAKPQPRERAGRIS 266
           W + IPT  I +LAK  P  ++GR++
Sbjct: 256 WGSMIPTAIIAHLAKDGPAAKSGRVN 281


>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1441

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 150  YLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNT 46
            Y  RVIV  ++ PR+L+ LH   Q T        T
Sbjct: 1051 YQDRVIVLTSLRPRVLQHLHAAQQGTSSMEQRART 1085


>SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)
          Length = 1012

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 156 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNT 46
           F Y  RVIV  ++ PR+L+ L+V  Q T        T
Sbjct: 811 FLYQDRVIVPTSLRPRVLQHLYVAHQGTSSMEQRART 847


>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
          Length = 184

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 150 SQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAGRI 263
           S  P    S A    N  PT+P    + P+PR +A RI
Sbjct: 94  SSPPNSTPSTAQAVANNDPTLPTPPFSTPRPRPKAKRI 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,932
Number of Sequences: 59808
Number of extensions: 180538
Number of successful extensions: 398
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)