Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0269
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    26   5.6  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    26   7.4  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    26   7.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 147 LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRYA 25
           L  V  TP + P L+ F+   ++   +++H VNT+ G +++
Sbjct: 23  LPAVFRTP-IRPDLVSFIADQVRRNRRQAHAVNTKAGKQHS 62


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 12  LIKTKHSDGPRGC*RNVISAQCSEC 86
           L++    DG   C  NVI  QC +C
Sbjct: 891 LLECNQQDGQCDCLPNVIGIQCDQC 915


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 73  WAEITLRQHPRGPSLC 26
           W +  L+QHP+ P LC
Sbjct: 293 WLQHLLKQHPKSPILC 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,156,774
Number of Sequences: 27780
Number of extensions: 124743
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)