Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0269
(328 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 28 1.3
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 28 1.3
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 27 3.0
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 27 3.0
At1g15030.1 68414.m01796 expressed protein 27 3.0
At3g61570.1 68416.m06896 intracellular protein transport protein... 26 5.2
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 26 5.2
At1g49650.1 68414.m05568 cell death associated protein-related s... 26 5.2
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 26 6.8
At3g60840.1 68416.m06806 microtubule associated protein (MAP65/A... 26 6.8
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 25 9.0
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam... 25 9.0
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 25 9.0
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 135 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 31
++T V P ++ F+H I + ++ + V+ + GH+
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 67
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 135 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 31
++T V P ++ F+H I + ++ + V+ + GH+
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 66
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 158 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 60
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 158 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 60
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +3
Query: 147 GSQMPRHLISDA-----HEWINEI-PTVPIYYLAKPQPRERAG 257
GS + +H +S+A +++ + P+VP +YL+K RER G
Sbjct: 33 GSALLKHHVSEASSSNVERFLDSVTPSVPAHYLSKTIVRERGG 75
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 111 RLLEFLHVDIQSTGQKSHCVNTREGH 34
+LLE H+ ++ TGQ+SH + H
Sbjct: 253 KLLEIKHLQMKLTGQESHAIGPGMEH 278
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 218 DRDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNHIASTPA 42
+R SG + + +R++ T ++ S +PP +A L FF ++ L HI T A
Sbjct: 143 NRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPPLNQATLRFFNVSNNQLS-GHIPPTQA 200
>At1g49650.1 68414.m05568 cell death associated protein-related
similar to PrMC3 [Pinus radiata] GI:5487873; weak
similarity to cell death associated protein [Nicotiana
tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
GI:22830761
Length = 374
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 138 LS*GSQMPRHLISDAHEWINEIPTVPIYY 224
L+ G+++P + WINE P PIY+
Sbjct: 122 LAAGNKLPLLIYFHGGAWINESPFSPIYH 150
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 DSHCPYLLSSETTAK-GTGWENQRGKKTLLSLTHVSLQCQT 319
D HCP LL E K GT ++ R +K L H S QT
Sbjct: 394 DKHCPVLLLQEDALKSGTTSQSSRRQKA-DKLPHGSSSSQT 433
>At3g60840.1 68416.m06806 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 648
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 236 TAKGTGWENQRGKKTL 283
TAK T WEN+RG + L
Sbjct: 406 TAKVTAWENERGNEFL 421
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 224 SSETTAKGTGWENQRGKKTLLSLTHVSLQCQTRV 325
S+ET GWE +GK+ S++ + TR+
Sbjct: 297 SAETVPNSVGWELNKGKRVPRSISLANSMDPTRL 330
>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
protein similar to peroxisomal-coenzyme A synthetase
(FAT2) [gi:586339] from Saccharomyces cerevisiae;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA; identical to cDNA adenosine
monophosphate binding protein 3 AMPBP3
(AMPBP3)GI:20799714
Length = 514
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 271 KEDPVELDSCLLTMPD*SQ 327
K P+E+D+ LLT PD SQ
Sbjct: 420 KISPIEVDAVLLTHPDVSQ 438
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 147 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAGRISGERR 278
G +P + +SD + INE+ P +AK +E + +G +R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,893,208
Number of Sequences: 28952
Number of extensions: 122518
Number of successful extensions: 277
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -