Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0268
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    30   0.36 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    29   0.48 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.84 
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    28   1.5  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   1.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   2.6  
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    26   4.5  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   4.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   4.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   4.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   5.9  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   7.8  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   7.8  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 632 VNGKKSLKDGTGTIKFLVPHVDPFIL 555
           + G + LK+GT T+KFL  +  PFIL
Sbjct: 50  IRGGRGLKEGTKTLKFLQKNNIPFIL 75


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
 Frame = -3

Query: 432 NYLQFKGQAPQAENLKKLEFTINSKNPSPDSYS--STLI-----VDADGRVYKLENNVVL 274
           +Y +   QAP + NL+   F  N    S  S +   TL+     +D DG    L + V+ 
Sbjct: 6   SYARRYSQAPSSSNLRTTTFGFNGLGTSRTSLAPQRTLVNARQSIDPDG----LSSRVLT 61

Query: 273 SKAHPVWTSNT-PVQARTDQERFSSRAPLLVLLK---AKSK*TYRISTAFALMPFLKETS 106
               P    NT     R     F S+ P +  +K     S   Y+   A  ++ +L E+ 
Sbjct: 62  PTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLSDRRYQQECATQVVNYLLESG 121

Query: 105 RRTTLPLNSRVTP 67
               L LN+R  P
Sbjct: 122 FSQPLGLNNRFMP 134


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -2

Query: 262 SSMDLKYSSPSSNRPRKIFIKGT-SLSST-QGKIEVNLQDINGICLDAVSEGNI---QKD 98
           SS+   Y+S  +   R   +K    L +T Q  I V    +  I  ++     +   + D
Sbjct: 67  SSLPHPYNSKQNEHVRSYILKSMRELEATNQSYITVIDDTLTNITFESTDNDTLTYFEGD 126

Query: 97  NIAIKFQGNSKEL 59
           NI +KF+G SK+L
Sbjct: 127 NILVKFEGKSKDL 139


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -2

Query: 211 IFIKGTSLSSTQGKIEVNLQDINGICLDAVS----EGNIQKDNIAIKFQGNSKELGMKNY 44
           I+ K TS+  T   I V+  D+ GI L A+        I+KD  +I+   +  ++ +K  
Sbjct: 604 IWKKVTSMYKT---INVDPGDVRGIGLQALKIIKDNSKIRKDYRSIQSITSRNKVSLKGA 660

Query: 43  IVEISSKD 20
            V+ISSKD
Sbjct: 661 SVDISSKD 668


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -1

Query: 626 GKKSLKDGTGTIKFLVP-HVDPFI-----LEYKYKNGLEGEKKSHESKRKRNMVKAKALQ 465
           G++S K      K  +P   +PF+     L+       EG+KK+   K+K + ++A    
Sbjct: 638 GRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKESPLEATEET 697

Query: 464 YPWILRSRHTKTISSSK 414
            PW L+    +T S+ K
Sbjct: 698 NPW-LQVPDQRTSSAKK 713


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 507 VEAKAKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL 379
           V   A  G+GKSA + L  A +    Y      +P  ENLK L
Sbjct: 278 VSLTAGRGRGKSAALGLAIAAAIAHGYSNIFITSPSPENLKTL 320


>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -2

Query: 238 SPSSNRPRKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIAIKFQGNSKEL 59
           SPS++R   + +K + L   +  ++VN++       DA S   I+K    IK +G+  ++
Sbjct: 63  SPSNDRRTVVILKLSLLVDGRDPVDVNME-------DAASVEQIRKKGFTIK-EGSEFKI 114

Query: 58  GMK 50
           G+K
Sbjct: 115 GVK 117


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 587 FLVPHVDPFILEYKYKNGLEGEKKSHESKRKRNMVKAKA 471
           F++  V P I EY Y  GLEG KK H       +V A A
Sbjct: 61  FIINLVSP-IYEYLYWGGLEG-KKPHYPSGIHGLVNAAA 97


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 378 EFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKAHPVWTSNTPVQARTDQERFSS 202
           +FT  S + +  S SS L ++ D     L+N V+     P   S TP+++ + +   +S
Sbjct: 503 DFTFPSNSQNSPSKSSNLSINIDIPPSPLQNTVI--SPQPTRRSRTPIRSLSGRSSVAS 559


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 429 YLQFKG--QAPQAENLKKLEFTINSKNPS 349
           Y+ F G  + P  +NLKKL+ +I S NPS
Sbjct: 668 YITFTGYDKKPSIDNLKKLDMSITS-NPS 695


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
 Frame = -3

Query: 519  KEPRVEAKAKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPSPDS 340
            K+    AK   GK  +  IS   + +   N    + Q     ++   + T         S
Sbjct: 1079 KDSDKHAKESKGKSLAPLISSRVSTNDTTNVAGIRSQRSFTTHIDLKKLTTRQNGAKKSS 1138

Query: 339  YSST--LIVDADGRVYKLENNVVLS---KAHPVWTSNTPVQART 223
            Y+ T   +++   ++Y       L+      P W SN P++ RT
Sbjct: 1139 YTGTNPCVLNYLNKIYAEAAASTLNVGAAVSPSWASNIPLRRRT 1182


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 262 MGLR*YYIVLQFVDPSISIYDERATV*VRRRILGVYSELQ 381
           +G+  Y   L F DP I  Y   A V     I GVY+ +Q
Sbjct: 12  LGVMQYSKKLDFTDPQIVYYARAAYVISNTIIFGVYAIIQ 51


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 572 VDPFILEYKYKNGLEGEKKSHESKRK 495
           V PF  + +YK+ LE    SH+S  K
Sbjct: 39  VSPFFKKERYKHHLETNVSSHQSATK 64


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 378 EFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVLSKAH 262
           E ++  +N S  S      ++   +VY + NN +LS+AH
Sbjct: 207 ELSLEIENFSQASQDLKTALEWKEKVYNVSNNTLLSEAH 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,818
Number of Sequences: 5004
Number of extensions: 66629
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)