Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0268
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 33 0.22
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 33 0.29
01_06_1251 + 35745749-35745820,35746142-35746258,35746411-357465... 32 0.50
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 3.5
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 28 6.2
01_06_1137 - 34801750-34801955,34802586-34802856,34802961-348031... 28 6.2
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 6.2
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 28 8.1
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 8.1
06_03_1246 + 28667511-28667750,28667846-28668037,28669145-286693... 28 8.1
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 28 8.1
04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822... 28 8.1
03_06_0678 - 35480711-35484658 28 8.1
>10_08_0259 + 16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 217 RKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIAIKFQ 77
+K+F+ LS Q K+ D+NG A SE + Q+ K+Q
Sbjct: 1004 KKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFFAKYQ 1050
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -2
Query: 454 YCVLATRKLSPVQRASSPSREPEETGVHYKLQESVSG 344
YC +AT+K P+ +ASS S+ P +T + +L+++ +G
Sbjct: 488 YCRIATKKNIPLSQASSKSQLPLKTFTYKELEKATAG 524
>01_06_1251 +
35745749-35745820,35746142-35746258,35746411-35746575,
35746722-35746775,35746857-35747006,35747110-35747454
Length = 300
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 462 SLDTAFSPHENYLQFKGQA-PQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLEN 286
SL T NY++ G A + +L + NP S+S+ ++D DG+ K+
Sbjct: 211 SLFTTLRNKANYMKVAGYAVARTTHLAPMGSGYLPNNPKAASFSNVQLIDQDGQTSKIPQ 270
Query: 285 NVVLSKAHPVWTSNTPV 235
++ ++ P S +P+
Sbjct: 271 DLPATQTFPSIYSVSPI 287
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 233 WTGVFEVHTGWALDSTTLFSNL*TLPSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGA 409
W G+ + TGWA D + P S E +G L + +SS+ R + +GA
Sbjct: 83 WHGIRQFRTGWA-DGPEFVTQCPIKPGGSYKYRFTIEGQEGTLWWHAHSSWLRATVYGA 140
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 465 ISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGR 304
I L F+ + + KG P+ EN+K+ + TI+S P P + T V GR
Sbjct: 181 IGLTYVFTKCDKSKKGKGGRPE-ENIKEFQETISSLYPEPPPWIMTSSVTGLGR 233
>01_06_1137 -
34801750-34801955,34802586-34802856,34802961-34803153,
34803754-34803834,34803914-34804039,34804119-34804269,
34804346-34804490,34805088-34805279
Length = 454
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 187 SSTQGKIEVNLQDI-NGICLDAVSEGNIQKDNIAIKFQGNSKE 62
SS + +N+ +I G CL + GN+ K ++ KFQ E
Sbjct: 382 SSEENACSINISEILTGKCLAKIKAGNLNKQRVS-KFQSTPSE 423
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 244 YSSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIAIKFQGNSK 65
Y SN PR F TS+ ++G + + NGI + V + ++ QG S+
Sbjct: 741 YDPHDSNVPRSPFGCSTSIMVSEGDLLQPEKIENGILFNVVKRDTLLTPTGGVELQGTSQ 800
Query: 64 E 62
E
Sbjct: 801 E 801
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 495 AKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL-EFTINSKN 355
A G+GKSA + L A + Y AP ENLK L +F N
Sbjct: 283 AARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFDFVCKGMN 330
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 83 FNGNVVLLDVSFRNGIKANAVDIL*VHFDFALSRTKRGALDENLSWSVRAWTGVFEVHTG 262
+N ++L+DV + A D L FAL + + G L + W W +
Sbjct: 30 WNQEIILVDVE----LILEAFDYL--QLPFALKKGRIGKLSVRIPWKTLGWGAIIIAIED 83
Query: 263 WALDS 277
W+ DS
Sbjct: 84 WSSDS 88
>06_03_1246 +
28667511-28667750,28667846-28668037,28669145-28669310,
28669785-28670200
Length = 337
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 423 QFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDAD 310
QFKG APQ L F + P SYS T + D
Sbjct: 218 QFKGAAPQYSPPMNLAFLRQMRQTCPLSYSPTTVAMLD 255
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 121 SEGNIQKDNIAIKFQGNSKELGMKNYIVEISSKDAGSG 8
S G I +A F G SK G + E S+KDA +G
Sbjct: 171 SFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAING 208
>04_03_0579 +
17481012-17481219,17481776-17481849,17482207-17482211,
17482523-17482607,17484144-17484231,17484307-17484398,
17484903-17485055
Length = 234
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 575 HVDPFILEYKYKNGLEGEKKSHESKRKRN 489
H DPF+ Y ++ G E K + R RN
Sbjct: 155 HADPFLYSYNFRMGRREESKYAKDVRLRN 183
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 169 IEVNLQDINGICLDAVSEGNIQKDNIAIKFQGNSKELGM 53
++ L DI LDA EGN+Q N ++F G S E G+
Sbjct: 1278 LQQRLDDIENKELDACYEGNLQFLN-RVRFSGKSFERGV 1315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,424
Number of Sequences: 37544
Number of extensions: 425403
Number of successful extensions: 1162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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