Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0268
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 29 2.7
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047) 29 3.6
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 29 3.6
SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.3
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 31.5 bits (68), Expect = 0.67
Identities = 27/103 (26%), Positives = 49/103 (47%)
Frame = -1
Query: 602 TGTIKFLVPHVDPFILEYKYKNGLEGEKKSHESKRKRNMVKAKALQYPWILRSRHTKTIS 423
TG I V + +P I+ G + + E+ + V AK QY I++ R +
Sbjct: 353 TGAITQQVSNGNPQIMMNGQPIGAQRIPVAMETLDEPLYVNAK--QYHRIIKRRQARAKL 410
Query: 422 SSKGKLPKPRT*RNWSSL*TPRIRLRTHTVARSS*MLMEGSTN 294
++GK+PK R R S+L + + LR T + ++G+++
Sbjct: 411 EAEGKIPKVRKHRRTSALASVAVTLRVTTTPAALNAPLQGASH 453
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 420 FKGQAPQAENLKKLEFTINSKNPSPDSYSST---LIVDADGRVYKLENNVVLSKAHPVW 253
F G PQ +N ++FT+ NPS +Y S +I+ +Y +E + +K H W
Sbjct: 1935 FSGTTPQYKNY--IDFTLKEVNPSNKNYKSVSKGIIITFSYYMY-IETSSPRTKGHKAW 1990
>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 253 PYWMGL--R*YYIVLQFVDPSISIYDERATV*VRRRILGVYSELQFLQVLGLGSLP 414
P W L R Y + L F P + YD ++ + R +LG+Y +F GSLP
Sbjct: 60 PLWRRLCRRDYELALSFRAPFDTYYDIYRSLSMSRLVLGIYLSERFYNSGKYGSLP 115
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 557 LEYKYKNGLEGEKKSHESKRKRNMVKAKALQYP-WILRSRHTKTISSSKGKLPKPR 393
LEY+Y+N L+ EKK +E K + +AL ++L++R+ + + K + R
Sbjct: 1224 LEYEYQNQLQREKKYYEDKIASLEAENEALMEDIFVLKTRYRQEKAMMKAEFETER 1279
>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
Length = 727
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 308 PSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 427
P A+ LY + +G +E++ + R +GAC ++WR
Sbjct: 642 PDAAHRQKCLYYNTEGVVEWVKRKTGCREVVFGACAVSWR 681
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 308 PSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 427
P A+ LY + +G +E++ + R +GAC ++WR
Sbjct: 55 PDAAHRQKCLYYNTEGVVEWVKRKTGCREVVFGACAVSWR 94
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 308 PSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 427
P A+ LY + +G +E++ + R +GAC ++WR
Sbjct: 214 PDAAHRQKCLYYNTEGVVEWVKKKTGCREVVFGACAVSWR 253
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 308 PSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 427
P A+ LY + +G +E++ + R +GAC ++WR
Sbjct: 82 PDAAHRQKCLYYNTEGVVEWVKRKTGCREVVFGACAVSWR 121
>SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -3
Query: 435 ENYLQFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENN---VVLSKA 265
E+YL K ++ + + E + ++ + Y T+ R+YK ++ +VL +
Sbjct: 5 ESYLASKSESDSSSEGESDEES-EDESEDEEVYVETVCQKGSSRIYKRKSPGDPLVLERP 63
Query: 264 HPVWTSNTP 238
P W+SN+P
Sbjct: 64 PPRWSSNSP 72
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -3
Query: 459 LDTAFSPHE---NYLQFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLE 289
LD A +P + + L K +P+ + + T+ + +P +YS L V + G ++L
Sbjct: 1555 LDVAEAPTDLTLSSLVIKENSPEGTLVGSI--TVTDPDSAPSAYS--LEVTSQGVPFRLV 1610
Query: 288 NNVVLSKAHPVWTSNTPV 235
N V HP+ TPV
Sbjct: 1611 GNDVFVSRHPLDHERTPV 1628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,272,713
Number of Sequences: 59808
Number of extensions: 488058
Number of successful extensions: 2733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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