Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0268
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 34 0.11
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 34 0.11
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 34 0.11
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 29 2.4
U12966-1|AAA20615.3| 510|Caenorhabditis elegans Aldehyde dehydr... 29 2.4
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 29 2.4
U88308-2|AAM15557.1| 313|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical pr... 28 5.5
U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical p... 28 5.5
U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical p... 28 5.5
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 28 5.5
AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear recep... 28 5.5
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ... 28 5.5
Z34799-7|CAA84320.2| 574|Caenorhabditis elegans Hypothetical pr... 28 7.3
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -3
Query: 411 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVL 274
+ PQ+E++ ++ +++S SPDS ST VD++ +L +N+ L
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSEADFARLADNLAL 645
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -3
Query: 411 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVL 274
+ PQ+E++ ++ +++S SPDS ST VD++ +L +N+ L
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSEADFARLADNLAL 645
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -3
Query: 411 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVL 274
+ PQ+E++ ++ +++S SPDS ST VD++ +L +N+ L
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSEADFARLADNLAL 645
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 227 RAWTGVFEVHTGWALDSTTLFSNL*TLPSASTMSVLLYESGDGFLEFIVNSSFFRFSAWG 406
+ WTG E G+ + S N TL S+ +E F+E + + FRFS +
Sbjct: 190 KKWTGS-ENELGFIIQSLLAIFNAITLAIISSCHFEFFEPSSQFMEDALTAMSFRFSHYF 248
Query: 407 AC 412
C
Sbjct: 249 VC 250
>U12966-1|AAA20615.3| 510|Caenorhabditis elegans Aldehyde
dehydrogenase protein1, isoform a protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 211 IFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIAIKFQGNSKELG 56
IFI + + GK + NG L V+EG+ NIA+K N+ +G
Sbjct: 32 IFINNEFVPAKSGKTFETINPANGKVLAQVAEGDKTDVNIAVKAAQNAFRIG 83
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 227 RAWTGVFEVHTGWALDSTTLFSNL*TLPSASTMSVLLYESGDGFLEFIVNSSFFRFSAWG 406
+ WTG E G+ + S N TL S+ +E F+E + + FRFS +
Sbjct: 190 KKWTGS-ENELGFIIQSLLAIFNAITLAIISSCHFEFFEPSSQFMEDALTAMSFRFSHYF 248
Query: 407 AC 412
C
Sbjct: 249 VC 250
>U88308-2|AAM15557.1| 313|Caenorhabditis elegans Hypothetical
protein C32E8.6b protein.
Length = 313
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 495 AKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTIN 364
+ Y TI + A SP EN+ + + P+ ENL + +F+ N
Sbjct: 259 SSYDLSALKTIYVGAAASPPENFAKVAERLPELENLIQCKFSYN 302
>Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical
protein C24H11.8b protein.
Length = 676
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 372 TINSKNPSPDSYSSTLIVDADGRVYKLENN 283
++N K PS DS +S + D DGR Y+ + +
Sbjct: 441 SLNHKQPSMDSSTSRRLRDIDGRSYRSDRS 470
>Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical
protein C24H11.8a protein.
Length = 653
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 372 TINSKNPSPDSYSSTLIVDADGRVYKLENN 283
++N K PS DS +S + D DGR Y+ + +
Sbjct: 441 SLNHKQPSMDSSTSRRLRDIDGRSYRSDRS 470
>Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical
protein C08F8.8 protein.
Length = 416
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 241 SSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDI 146
SSPSS+RPR T L S Q + VN++++
Sbjct: 385 SSPSSSRPRHSIRSITELLSIQEEESVNVEEV 416
>U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical
protein ZK546.2a protein.
Length = 485
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = -2
Query: 268 GPSSMDLKYSSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIA 89
GPS+ + +++ R + +KGT L +IE + + +SE I++ I
Sbjct: 247 GPSTSTVNKHLEMASKSRILQLKGTGLKKVPDEIEPLADVLRNL---ELSENKIREIPIF 303
Query: 88 IKFQGNSKELGMKNYIVEISSKDAGSGKR 2
I K+L + N +E + GS K+
Sbjct: 304 IGQFSQLKQLHLANNCLEFLPDELGSMKK 332
>U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical
protein ZK546.2c protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = -2
Query: 268 GPSSMDLKYSSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSEGNIQKDNIA 89
GPS+ + +++ R + +KGT L +IE + + +SE I++ I
Sbjct: 263 GPSTSTVNKHLEMASKSRILQLKGTGLKKVPDEIEPLADVLRNL---ELSENKIREIPIF 319
Query: 88 IKFQGNSKELGMKNYIVEISSKDAGSGKR 2
I K+L + N +E + GS K+
Sbjct: 320 IGQFSQLKQLHLANNCLEFLPDELGSMKK 348
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 242 VFEVHTGWALDSTTLFSNL*TLPSASTMSVLLY 340
V +HTG ALDST FS + + ST ++L +
Sbjct: 208 VVSIHTGIALDSTACFSAVSYPVTTSTSTILSF 240
>AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear receptor
NHR-67 protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 241 SSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDI 146
SSPSS+RPR T L S Q + VN++++
Sbjct: 378 SSPSSSRPRHSIRSITELLSIQEEESVNVEEV 409
>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
protein F55A12.8 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 522 EKEPRVEAK--AKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL-EFTI 367
EK+ V A G+GKSA + L A + Y +P ENLK L EF +
Sbjct: 271 EKQSNVTCSLTAGRGRGKSAAVGLSLAGAIAFGYTNIFVTSPSPENLKTLFEFVV 325
>Z34799-7|CAA84320.2| 574|Caenorhabditis elegans Hypothetical
protein F34D10.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 559 YWSINTRMDLKGRKRATSRSESEIW*RQKR 470
Y S RM+ K R++A R E +IW RQ+R
Sbjct: 156 YISYEQRME-KIRRKAIKREEMQIWERQRR 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,539
Number of Sequences: 27780
Number of extensions: 363912
Number of successful extensions: 995
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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