Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0268
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28070.1 68415.m03408 ABC transporter family protein                32   0.32 
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    31   0.55 
At5g13460.1 68418.m01549 calmodulin-binding family protein low s...    30   1.7  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    29   2.2  
At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At1g80980.1 68414.m09503 expressed protein                             29   2.2  
At1g80700.1 68414.m09469 expressed protein                             29   2.2  
At5g60280.1 68418.m07555 lectin protein kinase family protein co...    29   3.9  
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    28   5.1  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   5.1  
At1g06660.1 68414.m00706 expressed protein                             28   5.1  
At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia l...    28   6.8  
At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2 (ATP-P...    27   9.0  

>At2g28070.1 68415.m03408 ABC transporter family protein
          Length = 730

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = +1

Query: 217 LVCSSLDWSI*GPYWMGLR*YYIVLQFVDPSISIYDERATV*VRRRILGVYSELQFLQVL 396
           L+  S +W     YW+ L  Y I+   +    S      +  V  R+  V+  + F  +L
Sbjct: 451 LLVMSREWKY---YWLRLILYMILTLSIGTLYSGLGHSLSS-VATRVAAVFVFVSFASLL 506

Query: 397 GLGSLPFELEIVFVWRERSIQGYCSAFAFTIFRF 498
           G+  +P  L+ + ++R  +   +  AF F + +F
Sbjct: 507 GIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1240

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 396 ENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLENNVVL 274
           E+ +    TI  ++P+P+ Y+    ++ DG+VY L+ N +L
Sbjct: 220 ESFQNFSGTIKCEDPNPNLYTFVGNLECDGQVYPLDPNQIL 260


>At5g13460.1 68418.m01549 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 443

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
 Frame = -1

Query: 671 ESVQINADLYKIDVNGKKSLKDGTGTIK----FLVPHVDPFILEYKYKNGLEGEKKSHES 504
           ES   N ++ K+D NG+K   D   T +     ++   +  +   + K      +KS ES
Sbjct: 186 ESNIFNDNILKVDTNGQKRWDDSLLTKEEKEAVVMSKKEASLRRERIKEYAVTHRKSAES 245

Query: 503 KRKRNMVKAKALQYPWI----LRSRHTKTISSSKGKLPKPRT*RNWSSL*TPR 357
            +KR+  K K     W+     +S+  + +  S    PK  T  N   L TPR
Sbjct: 246 YQKRSNTKWKYWLDEWVDTQLTKSKELEDLDFSSKTKPKDET-LNEKQLKTPR 297


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 233 WTGVFEVHTGWALDSTTLFSNL*TLPSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGA 409
           W GV ++ TGWA D     +     P  S       +  +G L +  +SS+ R + +GA
Sbjct: 83  WHGVRQIRTGWA-DGPEFVTQCPIRPGKSYTYRFTIQGQEGTLWWHAHSSWLRATVYGA 140


>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 402 QAENLKKLEFTINSKNPSPDSYSSTLIVDADGRVYKLE 289
           Q E + K+   +  +N +PD+YS  + ++A G +Y LE
Sbjct: 176 QHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLE 213


>At1g80980.1 68414.m09503 expressed protein
          Length = 214

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -3

Query: 525 GEKEPRVEAKAKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPSP 346
           GEK+ + E K +  + +   + ++ A   HE  ++ + +  + E   K E  + +K PS 
Sbjct: 118 GEKKRKEEEKKEKEEAEQKALQVEAATKSHEELMEMRQRLGKIEETIK-EIVLETKKPSG 176

Query: 345 DSYSST 328
           ++ + T
Sbjct: 177 NAPTKT 182


>At1g80700.1 68414.m09469 expressed protein
          Length = 214

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -3

Query: 525 GEKEPRVEAKAKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPSP 346
           GEK+ + E K +  + +   + ++ A   HE  ++ + +  + E   K E  + +K PS 
Sbjct: 118 GEKKRKEEEKKEKEEAEQKALQVEAATKSHEELMEMRQRLGKIEETIK-EIVLETKKPSG 176

Query: 345 DSYSST 328
           ++ + T
Sbjct: 177 NAPTKT 182


>At5g60280.1 68418.m07555 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain, and
           PF00069: Protein kinase domain
          Length = 657

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 124 VSEGNIQKDNIAIKFQGNSKELGMKNYIVEISS 26
           V +G + +++IA+K   +  E GMK ++ EI+S
Sbjct: 353 VYKGTLPQEDIAVKRFSHHGERGMKQFVAEIAS 385


>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 118 EGNIQKDNIAIKFQGNSKELGMKNYIVEISSK 23
           +GNIQ++++ + F    ++L + +YI  + SK
Sbjct: 145 QGNIQRESLELSFDKKHRDLVVNSYIPYVESK 176


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 233 WTGVFEVHTGWALDSTTLFSNL*TLPSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGA 409
           W GV ++ TGWA D     +     P +S       +  +G L +  +SS+ R + +G+
Sbjct: 85  WHGVRQMRTGWA-DGPEFVTQCPIRPGSSYTYRFTIQGQEGTLWWHAHSSWLRATVYGS 142


>At1g06660.1 68414.m00706 expressed protein
          Length = 481

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = -3

Query: 528 RGEKEPRVEAKAKYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPS 349
           +GE +         GK KS     D   S   N  +  G + + E   K+ FT++S NP+
Sbjct: 204 KGELDRTARPTFTAGKNKSVRFECDLDQSNSSNSSE-NGSSRKPEMGGKICFTVSSPNPT 262

Query: 348 PDSYSSTLIVDADGRVY 298
           P   S  +     G +Y
Sbjct: 263 PLKLSDEM--QTPGTIY 277


>At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase
           class-I; similar to ESTs gb|AA660762, gb|AA220982,
           dbj|AU008137, gb|AI054783, and gb|AA100804
          Length = 600

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 229 SNRPRKIFIKGTSLSSTQGKIEVNLQDINGIC 134
           SN P  IFI GTS  S  G  +V     NG C
Sbjct: 565 SNGPTNIFINGTSKKSPNGLADVRYN--NGYC 594


>At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2
           (ATP-PRT2) identical to ATP phosphoribosyl transferase
           (AtATP-PRT2) [Arabidopsis thaliana] GI:6683619;
           supporting cDNA gi|6683618|dbj|AB025250.1|
          Length = 413

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 265 PSSMDLKYSSPSSNRPRKIFIKGTSLSSTQGKIEVNLQDINGICLDAVSE--GNIQK 101
           P +  L+YSSPSS+      +  + L S      V+L  I   CL  V+    N QK
Sbjct: 6   PLNATLQYSSPSSSSSSSSLVPSSPLFSPIPSTTVSLTGIRQRCLRMVTSCVSNAQK 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,529
Number of Sequences: 28952
Number of extensions: 352578
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)