Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0267
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    30   0.17 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.39 
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   4.8  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.8  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   4.8  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   6.4  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   8.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 169 SGCGRCRVWSMFVRYVRFSELVF*YNAASKLYIF 270
           +GCG+  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 352 ARKIRGRPENAGPDPVRNVRRFSRV 278
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 206 TNIDQTRHRPHPLPVQTRHAPV 141
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 94  FPYLHYSID*RLFTLETCCGYGYEPARHL 8
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 254 QNCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNW 433
           Q  +YL      S Y +D  RTR++ PSA + +    ++       R   T V  S +  
Sbjct: 133 QYLVYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETI 192

Query: 434 HGQ 442
            G+
Sbjct: 193 TGE 195


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 436 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 284
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 HDSVRPPFNGQLRTGTDKGN 449
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,243
Number of Sequences: 5004
Number of extensions: 41813
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)