Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0267
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.30
10_07_0134 + 13289641-13290216,13290435-13290914 31 0.39
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.52
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.6
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.8
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 2.8
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 4.8
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 4.8
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 4.8
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 27 6.4
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 6.4
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 27 8.5
03_05_0525 + 25200207-25200580,25201061-25201751 27 8.5
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 8.5
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.30
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 185 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 6
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 31.5 bits (68), Expect = 0.39
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -3
Query: 332 AGERGSGSSPKRKTIFASVILNIYSFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTR 153
A G GSS +++ + LN+ EA+ +N + + N+D +R P P P
Sbjct: 201 AAAGGGGSSCRQEAASELINLNVKETEASC---SNRSENSSEINLDISRPAPPPPPPPAN 257
Query: 152 HAPVLRANPY 123
+PV R P+
Sbjct: 258 ESPVNRGIPF 267
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 206 TNIDQTRH------RPHPLPVQTRHAPVLRANP 126
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 176 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 87
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 170 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 57
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 182 RPHPLPVQTRHAPVLRANPYSEVTDP 105
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 208 ARTSTRPGTGRIRFPSKPDTPRSSE 134
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 224 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 51
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 50 GDLLR 36
D R
Sbjct: 61 NDCPR 65
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 196 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 110
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 105 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILI*CGLKTV 263
W R G R+G ++ G+ R VPG+V R L + +V ++ G KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 461 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 357
LD+ IP+ R E + E R I+P + P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 373 RNRHDLTARKIRGR-PENAGPDPVRNVR 293
R +H TA ++ PEN GP PV + R
Sbjct: 238 RKQHKQTANSVQNTGPENVGPKPVNSPR 265
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 482 HRNALFXLDSRIPLVRASSELTVERRSYRIVPIAHETKPTRPY 354
H N LF L S + + A+ +++ SY+++ E +RPY
Sbjct: 106 HCNGLFLLFSLLVVNPATQRISISDGSYQVIHHPIEVYKSRPY 148
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 161 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 30
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,755
Number of Sequences: 37544
Number of extensions: 320979
Number of successful extensions: 1018
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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