Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0267
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 1.9
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 2.5
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 2.5
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 2.5
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 2.5
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 2.5
Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical pr... 28 4.4
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 7.6
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 27 7.6
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 215 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 102
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 276 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 416
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 232 LTR*NEHNARTSTRPGTGRIRFPSKPDT 149
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 232 LTR*NEHNARTSTRPGTGRIRFPSKPDT 149
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 232 LTR*NEHNARTSTRPGTGRIRFPSKPDT 149
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 232 LTR*NEHNARTSTRPGTGRIRFPSKPDT 149
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 200 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 45
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
>Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical
protein T20B3.1 protein.
Length = 608
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 233 YFNIMRPQN--CIYLI*HSRKSSYVSDWIRTR 322
Y MRP C Y I SR S VSDW+ +R
Sbjct: 550 YVAAMRPDGYGCFYRIGKSRISVAVSDWVSSR 581
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 190 PGTGRIRFPSKPDTPRSSEPILIPKLRI 107
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 357 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 449
++ R +F + H + PP G++R D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,738
Number of Sequences: 27780
Number of extensions: 245635
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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