Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0265
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   3.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   5.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   9.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.1  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 287 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 421
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 320 LRTPALFFDRCTAPVKLPAWQCLEP 246
           LRT    +DRC  P+K   W  +EP
Sbjct: 53  LRTKFNTYDRCIPPMKKSLWGWIEP 77


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 275 KLPAWQCLEPDHAGVLNGDERFRHVTTLHAWN 180
           K+ + QCL  ++ G+LN  E F H   +H  N
Sbjct: 91  KIKSLQCLFCNNEGLLNRQEWFEHSFHVHGLN 122


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 454 GARKVTTGITGLWQPSVHTTLLFDPSMSALPII 552
           G  KV   +  LW+   H TLLF  +   L I+
Sbjct: 625 GKLKVIRALLTLWKKQGHRTLLFSQTRQMLDIL 657


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 404  SPYAY*TSGSSQLLPFCSTRGF 339
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 313 HLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAP 140
           HLR S+  V   S SPP S + +        ++ S+  P   LG++        D  P
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQP 226


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 468  NFSGTSC*KLFILKDR*AVLSQSL 397
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,253
Number of Sequences: 5004
Number of extensions: 56024
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)