Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0265
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth...    27   8.5  
AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopente...    27   8.5  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 313 HLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSAT 203
           HL  SL +  PQSNS P +V  R+ R   T TS S T
Sbjct: 248 HLGSSLQNEHPQSNSRPSTVIPRVQR---TNTSASLT 281


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = -2

Query: 352 PREVSVLAELALGHLRYSLTDVPPQSNSPPGSVSNRI-TREF*TATSVSATSPLCTLGTK 176
           P+++S+    ++G    +  ++P Q NSP  +V N   T +   A S + ++       K
Sbjct: 252 PKKISLDKPKSVGSPSNAHNEIPSQKNSPKSAVKNETDTEDALMAKSGNLSTAAVMFKNK 311

Query: 175 -HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 65
            H      +D    P N    ET+  ++ +   ++ ++
Sbjct: 312 VHTLQCQFLDSHGNPQNTPDFETLSKILSEHFDKKELT 349


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 295 TDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 119
           T   P+S+S     + R+   + T T  +A S      T  +AP  I DR   P  NR+S
Sbjct: 69  TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128

Query: 118 NE 113
            E
Sbjct: 129 AE 130


>U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth
           rate protein 1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 293 RCTAPVKLPAWQCLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYRPR 144
           +C    +   W  L+P     LNGD+ F+       LH        RR+YR R
Sbjct: 277 QCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSR 329


>AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopentenyl
           transferase protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 293 RCTAPVKLPAWQCLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYRPR 144
           +C    +   W  L+P     LNGD+ F+       LH        RR+YR R
Sbjct: 277 QCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSR 329


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -2

Query: 187 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHL 59
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHM 326


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 282 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLER 178
           P++TP+   S      S +R + FP  HH  RL+R
Sbjct: 409 PTRTPKQRRSSRIRSISDEREQLFPRHHHGRRLDR 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,093,102
Number of Sequences: 27780
Number of extensions: 323625
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)