Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0265
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.0  
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    29   2.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.6  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    29   2.6  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   6.0  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.0  
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    28   6.0  
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    27   7.9  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    27   7.9  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   7.9  

>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 587 G*TIQRLANLFAMIGRADIEGSKSNVV*TLGCHKP 483
           G  IQRL    A   RA +EGS SN+  +L C++P
Sbjct: 6   GSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEP 40


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 567 GEFVRNDRKSRHRRIKKQRRMNAWLPQASYPC 472
           G   R +RKS ++ +KK+  + +W  ++S+PC
Sbjct: 131 GRNKREERKSIYKDVKKEEEIESW-SESSHPC 161


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 326 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 439
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 202 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCH 53
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+   H
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIAVKAH 102


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -2

Query: 301 SLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 122
           S T  PP S +PPG   +  +    +A S  ATSP  ++  K  +P       P PP   
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSS---SAVS-PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224

Query: 121 S 119
           S
Sbjct: 225 S 225


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 151 DRAPLPPNRVSNETMKVVVFQRRSRET 71
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 573 TLGEFVRNDRKSRHRRIKKQRRMNAWLPQASYPCG 469
           TL +   NDR+         RR N + P+A Y CG
Sbjct: 6   TLNQERDNDRERTRASYNNDRRRNDYDPRACYKCG 40


>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 525 SFDVGSSYHCEQIRQALDCSP 587
           S  +G  +HC+ +++ L+C+P
Sbjct: 570 SVQLGQEFHCQLLKRGLECNP 590


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 282 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVR 166
           P ++PR +VSR+  R S K     P R    R+ R+ VR
Sbjct: 563 PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVR 601


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 190  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 95
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,595
Number of Sequences: 28952
Number of extensions: 308435
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)