Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0263
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    31   0.13 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.54 
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.6  
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   8.8  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   8.8  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   8.8  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 584 ARKIRGRPENAGPDPVRNVRRFSRVYI 504
           AR I GRPEN G   ++N+ R S+V++
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKVFL 240


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 401 SGCGRCRVWSMFVRYVRFSE 460
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 180 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 43
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 438 TNIDQTRHRPHPLPVQTRHAPV 373
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 91

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 484 LKNCIYLIYTRENRLTFRTGSGPAFSGLPRIFLAVXSCRFRFVR 615
           LKN  Y IY+R N  T    +  +FSGL           FR VR
Sbjct: 19  LKNVTYDIYSRANDYTRIDRATESFSGLSNSVKKSTENFFRVVR 62


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 39  RVFDGVTQSGLKTPPRGPGRV 101
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 474 IMRPQKLYIFNIHSRKSSYVSDWIRTR 554
           I+  +K++++++H   S+   DWI  +
Sbjct: 259 ILNNKKVFLYDVHPLHSTSAEDWIHMK 285


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 39  RVFDGVTQSGLKTPPRGPGRV 101
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,065
Number of Sequences: 5004
Number of extensions: 55564
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)