Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0263
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 3.5
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 3.5
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 3.5
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 3.5
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 3.5
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 8.1
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 27 8.1
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 27 8.1
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.1
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 8.1
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 447 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 334
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 LTR*NEHNARTSTRPGTGRIRFPSKPDT 381
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 LTR*NEHNARTSTRPGTGRIRFPSKPDT 381
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 LTR*NEHNARTSTRPGTGRIRFPSKPDT 381
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 LTR*NEHNARTSTRPGTGRIRFPSKPDT 381
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 432 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 277
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 214 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 86
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 498 IFNIHSRKSSYVSDWIRTRVLRPSADLP 581
+ NI ++ SSY DWI V D+P
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIP 357
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 498 IFNIHSRKSSYVSDWIRTRVLRPSADLP 581
+ NI ++ SSY DWI V D+P
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIP 357
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 198 IRTPPQMRCSSRSEPYLPSIGFHGT 124
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 174 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 1
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,367
Number of Sequences: 27780
Number of extensions: 319607
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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