Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0263
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 400 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 498
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 400 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 498
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 93  PDLSAASSGHFGLPRRTLVFK 31
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 162 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 79
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 139 RIPWNSNAQAEKKTLPGPLG 80
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 275 CCGYGYERRDIS 240
           CCG GY+ ++++
Sbjct: 117 CCGRGYKTQEVT 128


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 275 CCGYGYERRDIS 240
           CCG GY+ ++++
Sbjct: 118 CCGRGYKTQEVT 129


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 48  DGVTQSGLKTPPRGPG 95
           DG     L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 411 PHPLPVQTRHAPVLRANPYSEV 346
           P PLP     A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,381
Number of Sequences: 438
Number of extensions: 4265
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)