Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0258
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 1.3
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 30 1.3
07_03_0846 - 21983581-21986055 29 2.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 4.0
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 28 5.2
06_01_0655 + 4742267-4742531,4743313-4744136 28 6.9
06_01_0918 + 7083570-7083705,7083977-7084008 27 9.2
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 27 9.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 9.2
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 232 ATLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
A A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 30.3 bits (65), Expect = 1.3
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 18 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 188
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 189 GSTVSISLPDSARVASALKAFRIIPRMVASHQRPL-GRVHEPNV 317
GSTVSI+LP +V S+ +A I + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 90 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARVASA 239
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 255 IIPRMVASHQRPLGRVHEPNVRNCGSSRT 341
++P A+HQ LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 590 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 498
YK F A G RKV GIT + PS+ D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARVAS 236
++RDP G+R + F +++ E RG ++ PD A VAS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 539 GLWQPSVHSDVLFDPSMSALPIIAKQNSP 453
GLW+PS H+ L P+ S L + +P
Sbjct: 10 GLWRPSAHAAALRAPASSVLSTTPPRQTP 38
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 319 RTFGSCTRPSGRWCEATIRGIILNAFKAEA--TLAESGKDMLTVEPRESG--GSKQCDFT 152
R GS RP C A I+ + + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 151 SRV 143
R+
Sbjct: 146 RRL 148
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 213 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 109
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,599
Number of Sequences: 37544
Number of extensions: 343862
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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