Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0258
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    28   4.4  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   7.7  
At2g07738.1 68415.m00989 hypothetical protein                          27   7.7  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 405 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAVGAKLPSAGL 256
           T+V+++    L+ C CD +      N      +H   ++ + +K P AGL
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGL 681


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 12  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 164
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At2g07738.1 68415.m00989 hypothetical protein
          Length = 88

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 327 RSFGHLVHALGRAAVGAKLPSAGLS*T 247
           + F HL   +G++ +G+++PS G S T
Sbjct: 53  QDFDHLAEEIGKSYIGSRVPSKGSSST 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,490
Number of Sequences: 28952
Number of extensions: 267219
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)