Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0256
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 29 0.27
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 1.1
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 1.9
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 2.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 3.3
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.3
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 25 4.4
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 4.4
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 5.8
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 25 7.6
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 452 TGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKF 351
T DN + ++ A N K++ NML +T D L+K+
Sbjct: 58 TSDNIQITVIVPAYNESKRIGNMLQETVDHLEKY 91
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 349 KNLSNGSDVLASIFDNFLRTLSAVNRPTNDPLSPVTF 459
K++S SDVL + F + L LSA P + + P+ F
Sbjct: 476 KSVSQDSDVLDTWFSSALLPLSAFGWPKSKDIQPLPF 512
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 1.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 415 LTMYARSYQICLPKHQIRWTN 353
L+ ++ Q+C+ K+ IRW N
Sbjct: 153 LSFFSYGLQVCIEKNMIRWAN 173
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 42 YCKNV--SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEYLRVNL 209
Y KN S S F A ++ + + FK+ ++F+T+ F+ N+ LR+NL
Sbjct: 284 YVKNKIDSLSSDVFFSAILKFYAVGGDFQGFKKLLSFMTDYNVNFSVSTLNQLLRLNL 341
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 48 KNVSFSEQSHFYAYIEKKTIHFETTP-FKQN 137
KN SF E S +YI +H +T+P FK+N
Sbjct: 154 KNNSFKEVSTSKSYISSGYLHPKTSPIFKKN 184
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 221 IPTGRTAEETDRRLQRRGR-CRAFEIQALSWVCSI 322
IP+G +AEE+D L GR R+F S+ S+
Sbjct: 230 IPSGMSAEESDELLSSSGRKTRSFNTPFSSFFASL 264
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 63 SEQSHFYAYIEKK-TIHFETTPFKQNITFLTN 155
++Q F +Y K +HF TP + F+TN
Sbjct: 65 ADQDQFMSYTTSKYKLHFYETPTNLRLIFITN 96
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 413 DNVRKKLSNMLAKTSDPLDKFL-VKKYYKVDLSNKPSLGLVSR 288
+NV + L+ LA S+ +D+F+ +K ++ + + GL++R
Sbjct: 608 ENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAGLLTR 650
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 240 QRKLIDDYNVGGDVEHSRYKP 302
+R+ DDY GGD Y+P
Sbjct: 192 RRRYRDDYRRGGDYRRDAYRP 212
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = -3
Query: 369 RSVGQIFSEKVLQGRLIEQTQLRAC--------ISNARHLPLRCSR 256
R Q++++ LQ RL ++L C ++N +HLP++C R
Sbjct: 271 RGYTQVYAD--LQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKR 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,218
Number of Sequences: 5004
Number of extensions: 41324
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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