Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0256
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    30   0.81 
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    29   1.4  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    28   4.3  
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618...    28   4.3  
07_03_0105 + 13455906-13457198                                         27   10.0 
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966...    27   10.0 

>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = -1

Query: 443 NGSLVGLLTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLGLVSRMLDISPYV 264
           NG+L+ LL   N   KLS ML   +  L  F   K        +P+L  ++R++  +   
Sbjct: 199 NGALLPLLAQLNEHTKLS-MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE 257

Query: 263 VVVDQFPLLSYLLE*SHLKIYSQV 192
           V+ D    LSYL + ++ KI + +
Sbjct: 258 VLTDACWALSYLSDGTNDKIQAVI 281


>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 SWVCSISLPCNTFSLKICPTDLMFWQAYLITS 400
           S++CS+ L     S K CP  ++F Q+ L+TS
Sbjct: 657 SFLCSMVLVATKESKKFCPEAVVFLQSLLVTS 688


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 245 PLLSYLLE*SHLKIYSQVFIRYQTSKWKFLVCKKCYILFKWCSLK 111
           P L+ LL+ +  KIYS  F +     W   +    Y+L+ W S K
Sbjct: 418 PALAGLLQ-TRFKIYSLTFDQSTLPGWVMCIAWLVYLLWLWISFK 461


>03_03_0089 +
           14359650-14359889,14360859-14361120,14361633-14361813,
           14362141-14362288,14362836-14363040,14363304-14363362
          Length = 364

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 327 RLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGIITSEDLL 199
           R  E+  LR+     R LP+R +RR++    LP G+ T   +L
Sbjct: 37  RPTERNLLRSAQFLRRELPIRIARRALDLDSLPFGLSTKPAIL 79


>07_03_0105 + 13455906-13457198
          Length = 430

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 251 DRRLQRRGRCRAFEIQAL 304
           DRR +RRGR RA E++ L
Sbjct: 226 DRRRRRRGRLRAVEVEPL 243


>05_07_0179 +
           28195929-28195954,28195966-28196286,28196397-28196664,
           28203206-28203667
          Length = 358

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 290 EIQALSWVCSISLPCNTFSLKICPTDL 370
           + + LSW C I LP    SL  C  D+
Sbjct: 266 QTEVLSWDCKIPLPVTPQSLPSCKWDI 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,023
Number of Sequences: 37544
Number of extensions: 215478
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)