Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0256
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.83 
SB_2628| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 29   2.5  
SB_50570| Best HMM Match : PAN (HMM E-Value=0.0011)                    29   2.5  
SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)           28   4.4  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   5.9  
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           27   5.9  
SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)          27   7.7  

>SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 428 GLLTADNVRKKLSNMLA--KTSDPLDKFLVKKYYKV 327
           GL+T  N R KLSN+LA   +S  + K  + KYY+V
Sbjct: 59  GLITETNTRAKLSNILAVFASSSLMLKQNIDKYYRV 94


>SB_2628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 233 RTAEETDRRLQRRGRCRAFEIQALSWVCSISLPCNTFSL 349
           RT     +  QR    RA +   L WV S++LPC+ F L
Sbjct: 58  RTITVNAQHRQRITAKRAIKCSMLIWVISLTLPCSYFKL 96


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 349 KNLSNGSDVLASIFDNFLRTLSAVN 423
           +N+ NG+ +LA +F NF RTL + +
Sbjct: 83  QNIDNGAVILAVVFKNFKRTLHSTS 107


>SB_50570| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 138

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -1

Query: 197 QVFIRYQTSKWKFLVCKKCYILFKWCSLKMNCFFFNVSIKMGL 69
           +V +    S+   +  ++C+  +K CS + NCF FN++ K+G+
Sbjct: 32  RVLVNIVISRVSTISFQRCF--YK-CSKEQNCFSFNLNFKLGV 71


>SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 269 RGRCRAFEIQALSWVC---SISLPCNTFSLKICPTDLMFWQAYLIT 397
           +G C A   + LSWV    S S  C T + ++C  D+  WQ + I+
Sbjct: 29  KGGCAA---RRLSWVTPGFSQSRRCKTTASELCAADMHMWQEHAIS 71


>SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)
          Length = 1075

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 227 LE*SHLKIYSQVFIRYQTSKWKFLVCKKCYILFKWCSLKMNCFFFNV 87
           L+ SHL  +  +F+R   S++  L    C +   +CS+  N  F+N+
Sbjct: 104 LDDSHL--WFSIFMRPARSRFTRLQRVSCCLTLLYCSMLANAMFYNI 148


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 350  KICPTDLMFWQAYLITSCVHCQQLIDQLMT 439
            K CP D   WQ + +T+  HC +L++  M+
Sbjct: 1144 KGCPED---WQVHKVTNINHCYKLVETTMS 1170


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 395 LSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLG---LVSRMLDISPYVVVVDQFPLLS 234
           L+N+    +D L+K  V ++Y++    KPSL      SR + I+  +V++ Q  + S
Sbjct: 197 LNNIKIGIADTLEKRSVNRFYRLSDRRKPSLQRSVCCSRSIMIALKIVILTQLVMAS 253


>SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)
          Length = 594

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 FFTKNLSNGSDVLASIFDNFLRTLSAV 420
           FF    +  S V AS FD+ L T+S+V
Sbjct: 408 FFVSGQTESSSVFASAFDSLLGTMSSV 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,445
Number of Sequences: 59808
Number of extensions: 291117
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)