Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0256
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical pr... 30 0.95
AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical... 30 0.95
AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical... 30 0.95
AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical ... 30 0.95
Z83120-4|CAB05585.1| 390|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 28 3.8
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 28 3.8
X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal frag... 27 6.7
U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock prot... 27 6.7
U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock prot... 27 6.7
U21322-4|AAA62540.2| 508|Caenorhabditis elegans Hypothetical pr... 27 6.7
K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock prot... 27 6.7
K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock prot... 27 6.7
U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical
protein F33H2.3 protein.
Length = 229
Score = 29.9 bits (64), Expect = 0.95
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = -1
Query: 458 NVTGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKF----LVKKYYKVDLSNKPSLGLV- 294
N GDN S L+ KK++ LA LD ++ +++DLSN PSLGL+
Sbjct: 73 NQLGDNASFDVLVKNAPDLKKIT--LASNKLSLDNLRCLKVLPNLFELDLSNNPSLGLLE 130
Query: 293 ---SRMLDISPYVVVVD 252
+M ++ P + ++D
Sbjct: 131 DYREKMFEMIPSLKILD 147
>AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.16 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.95
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 57 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 194
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 351 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 396
>AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.15 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.95
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 57 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 194
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 351 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 396
>AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical
protein F45D11.14 protein.
Length = 508
Score = 29.9 bits (64), Expect = 0.95
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 57 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 194
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 358 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 403
>Z83120-4|CAB05585.1| 390|Caenorhabditis elegans Hypothetical
protein R06A4.6 protein.
Length = 390
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 180 VSNEYLRVNLQM*LFQQVGQQRKLIDDYNVGGDVEHSRYKP*AGFVR*VYLVILFH 347
V + L NL+M F Q KL+D+ ++ GD E YK + ++ V++ H
Sbjct: 178 VEADELIPNLEMDNFDQTELLPKLLDNLHLHGDQEEGHYKMMENYEWALWEVLMVH 233
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical protein
C08H9.2 protein.
Length = 1220
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +2
Query: 191 IPESKSSDVIIPTGRTAEETDRRLQR-RGRCRAFEIQA-----LSWVCSISLP 331
IP+ SS+ I TG+T E D+ L+ RG+ +E QA W SI++P
Sbjct: 963 IPKDNSSEDITVTGQT-ENVDQALEALRGKLGEYEAQAEDRKLKQWSMSINVP 1014
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 225 QQVGQQRKLIDDYNVGGDVEHSRY 296
Q+V +QRKL++ N+GG+ S Y
Sbjct: 532 QEVEKQRKLMESVNIGGENVSSEY 555
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 225 QQVGQQRKLIDDYNVGGDVEHSRY 296
Q+V +QRKL++ N+GG+ S Y
Sbjct: 532 QEVEKQRKLMESVNIGGENVSSEY 555
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 225 QQVGQQRKLIDDYNVGGDVEHSRY 296
Q+V +QRKL++ N+GG+ S Y
Sbjct: 532 QEVEKQRKLMESVNIGGENVSSEY 555
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 225 QQVGQQRKLIDDYNVGGDVEHSRY 296
Q+V +QRKL++ N+GG+ S Y
Sbjct: 532 QEVEKQRKLMESVNIGGENVSSEY 555
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 225 QQVGQQRKLIDDYNVGGDVEHSRY 296
Q+V +QRKL++ N+GG+ S Y
Sbjct: 536 QEVEKQRKLMESVNIGGENVSSEY 559
>X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal
fragment of hsp 16-48 protein.
Length = 135
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 351 FSEKVLQGRLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGII 217
FS+ +L ++ T +++ ISN L + +++ SS +P+ +
Sbjct: 88 FSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPINFV 132
>U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.49 protein.
Length = 143
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 351 FSEKVLQGRLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGII 217
FS+ +L ++ T +++ ISN L + +++ SS +P+ +
Sbjct: 96 FSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPINFV 140
>U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.48 protein.
Length = 143
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 351 FSEKVLQGRLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGII 217
FS+ +L ++ T +++ ISN L + +++ SS +P+ +
Sbjct: 96 FSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPINFV 140
>U21322-4|AAA62540.2| 508|Caenorhabditis elegans Hypothetical
protein K10D2.2 protein.
Length = 508
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 320 SNKPSLGLVSRMLDISPYVVVVDQFPLLSYLLE*SHLKIYSQVFIRYQTSKWKFL 156
++K SL + ++ + Y+ V+ P+L L E +H K + Y T WKF+
Sbjct: 290 ASKGSLSSYAWIVMLIHYLQQVEPIPVLPCLQEMNHQKSENVYVQGYNTYYWKFV 344
>K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock protein
16-48a protein.
Length = 144
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 351 FSEKVLQGRLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGII 217
FS+ +L ++ T +++ ISN L + +++ SS +P+ +
Sbjct: 97 FSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPINFV 141
>K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock protein
16-48 protein.
Length = 143
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 351 FSEKVLQGRLIEQTQLRACISNARHLPLRCSRRSVSSAVLPVGII 217
FS+ +L ++ T +++ ISN L + +++ SS +P+ +
Sbjct: 96 FSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPINFV 140
>U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical
protein T14E8.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 63 SEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTC 176
+E + F+A +++ P ++ + LTN E+P C
Sbjct: 144 AEAAQFFAQMQQVPSKLNNLPQRKKLKVLTNKEYPMQC 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,841
Number of Sequences: 27780
Number of extensions: 227547
Number of successful extensions: 551
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -