Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0256
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu...    30   0.90 
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim...    28   2.7  
At2g43950.3 68415.m05464 expressed protein                             28   2.7  
At2g43950.2 68415.m05465 expressed protein                             28   2.7  
At2g43950.1 68415.m05463 expressed protein                             28   2.7  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    28   2.7  
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i...    28   3.6  
At1g30160.1 68414.m03687 expressed protein contains Pfam profile...    28   3.6  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   6.3  
At1g62920.1 68414.m07104 expressed protein ; expression supporte...    27   6.3  
At1g55580.1 68414.m06361 scarecrow transcription factor family p...    27   6.3  

>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain; gc exon splice site at
           20574 is based on protein alignment, and is not
           confirmed experimentally
          Length = 625

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 132 QNITFLTN*EFPFTCLVSNEYLRVNLQM*LFQQVGQQRKLIDDYNVGGDVEHS 290
           +N+T L      F  L +  Y+R N+Q+ + + + Q  K  D Y +  D+ HS
Sbjct: 335 ENLTVLRFSNLVFEPLWNRTYIR-NIQVIISESIAQTEKFSDGYGIIRDIVHS 386


>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
           similar to importin alpha 2 [Capsicum annuum]
           GI:13752562; contains Pfam profiles PF01749: Importin
           beta binding domain, PF00514:
           Armadillo/beta-catenin-like repeat; non-consensus GG
           donor splice site at exon 1 and 6; CT acceptor splice
           site at exon 2
          Length = 444

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = -1

Query: 440 GSLVGLLTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLGLVSRMLDISPYVV 261
           G+L+ LL+  N   KLS ML   +  L  F   K        +P+L  + R++  +   V
Sbjct: 205 GALIPLLSQLNEHAKLS-MLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDEEV 263

Query: 260 VVDQFPLLSYLLE*SHLKIYSQV 192
           + D    LSYL + ++ KI S +
Sbjct: 264 LTDACWALSYLSDGTNDKIQSVI 286


>At2g43950.3 68415.m05464 expressed protein
          Length = 280

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 236 TAEETDRRLQRRGRCRAFEIQALSWVCSISLPCN----TFSLKICPTD-LMFW 379
           TA  TD  L+ R    A++  ALS++ SISLP N     F  +  P+D L +W
Sbjct: 213 TALYTDEELRLR---YAYKDDALSFIPSISLPSNAASFAFKRRFSPSDKLSYW 262


>At2g43950.2 68415.m05465 expressed protein
          Length = 333

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 236 TAEETDRRLQRRGRCRAFEIQALSWVCSISLPCN----TFSLKICPTD-LMFW 379
           TA  TD  L+ R    A++  ALS++ SISLP N     F  +  P+D L +W
Sbjct: 213 TALYTDEELRLR---YAYKDDALSFIPSISLPSNAASFAFKRRFSPSDKLSYW 262


>At2g43950.1 68415.m05463 expressed protein
          Length = 343

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 236 TAEETDRRLQRRGRCRAFEIQALSWVCSISLPCN----TFSLKICPTD-LMFW 379
           TA  TD  L+ R    A++  ALS++ SISLP N     F  +  P+D L +W
Sbjct: 213 TALYTDEELRLR---YAYKDDALSFIPSISLPSNAASFAFKRRFSPSDKLSYW 262


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 415 LTMYARSYQICLPKHQIRWTN 353
           LT  +R++ +CLP+H++R+ N
Sbjct: 152 LTSVSRTFALCLPEHRLRFFN 172


>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
           importin alpha-2 subunit (Karyopherin alpha-2 subunit)
           (KAP alpha) SP:O04294 from [Arabidopsis thaliana]
          Length = 531

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = -1

Query: 440 GSLVGLLTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLGLVSRMLDISPYVV 261
           G++  LL+  N   KLS ML   +  L  F   K        +P+L ++ R++      V
Sbjct: 203 GAMTPLLSQFNENTKLS-MLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEV 261

Query: 260 VVDQFPLLSYLLE*SHLKIYSQV 192
           + D    LSYL + S+ KI + +
Sbjct: 262 LTDACWALSYLSDNSNDKIQAVI 284


>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 311

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 400 RSYQICLPKHQIRWTN 353
           R   +C P+H +RWTN
Sbjct: 99  RQLSLCRPRHDLRWTN 114


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 398 KLSNMLAKTSDPLDKFLVKKYYKVDLSN-KPSLGLVSRMLDISPY 267
           KLS+ L  T+DPL K   K    V+ +N K S G  + +L ++ Y
Sbjct: 519 KLSSSLLSTADPLHKASAKILVSVEGANTKASSGSPADVLGLASY 563


>At1g62920.1 68414.m07104 expressed protein ; expression supported
           by MPSS
          Length = 260

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 338 YYKVDLSNKPSLGLVSRMLDISPYVVVVDQFPLLSYL 228
           Y  +   N+P+  + S MLD+  Y   +D F    YL
Sbjct: 37  YSAIRYENRPTGPIPSLMLDLEVYTGAIDDFDFEDYL 73


>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 28  DILFDIVKMFHFQNNPIFMLTLKKKQFILRLHH 126
           +I  +++K F F N PI    L + + +LRLH+
Sbjct: 383 EIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHY 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,834
Number of Sequences: 28952
Number of extensions: 196765
Number of successful extensions: 481
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)