Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0254
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 53 1e-06
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 32 2.1
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 32 2.1
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein. 31 4.9
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein. 31 4.9
M12140-2|AAA88027.1| 564|Homo sapiens envelope protein protein. 30 6.5
EF623992-1|ABR25252.1| 354|Homo sapiens Uba6-specific E2 conjug... 30 8.6
BC016757-1|AAH16757.1| 220|Homo sapiens Sin3A-associated protei... 30 8.6
AF055993-1|AAC33316.1| 220|Homo sapiens mSin3A associated polyp... 30 8.6
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3
Query: 504 KNNVAMNAWLPQASYPCGNFSGTSC*K 584
K++VAMNAW PQASYPCGNFS TSC K
Sbjct: 11 KSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 309 HALGRAAGGAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESRE 178
H A G P++ C TP P P P PA +CS SPE R+
Sbjct: 51 HLQAFAQPGTHFPTSN-C-TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 309 HALGRAAGGAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESRE 178
H A G P++ C TP P P P PA +CS SPE R+
Sbjct: 51 HLQAFAQPGTHFPTSN-C-TPTPPTPVLPGPASLCSPASPELRQ 92
>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
Length = 1032
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 280 EATIRGIMPNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 119
E +GI+ + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719
Query: 118 RSPFG 104
P G
Sbjct: 720 SEPLG 724
>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
Length = 1013
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 280 EATIRGIMPNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 119
E +GI+ + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700
Query: 118 RSPFG 104
P G
Sbjct: 701 SEPLG 705
>M12140-2|AAA88027.1| 564|Homo sapiens envelope protein protein.
Length = 564
Score = 30.3 bits (65), Expect = 6.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 429 LLMGEQSNAWRILLRNDRKSRHRRIKNNVAMNAWLPQASYPCGNFSGTSC 578
++ E + A +L + K R+ +N +A++ L Q CG FS T+C
Sbjct: 484 IITNETAGALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFSLTNC 533
>EF623992-1|ABR25252.1| 354|Homo sapiens Uba6-specific E2
conjugating enzyme 1 protein.
Length = 354
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 312 VHALGRAAGGAKLPSAGLCRTPLRPKPA*PNPARICSLWSP 190
V A AAGGA P +GL P P A + A + S W P
Sbjct: 45 VWAAAAAAGGAGGPGSGLAPLPGLPPSAAAHGAALLSHWDP 85
>BC016757-1|AAH16757.1| 220|Homo sapiens Sin3A-associated protein,
30kDa protein.
Length = 220
Score = 29.9 bits (64), Expect = 8.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 300 GRAAG-GAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 130
G AG GA++P AG P A P P ++C L R A N + + +
Sbjct: 35 GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94
Query: 129 RRDVEAHLDRGDR 91
++ V+ LD+ R
Sbjct: 95 QKKVKIELDKSAR 107
>AF055993-1|AAC33316.1| 220|Homo sapiens mSin3A associated
polypeptide p30 protein.
Length = 220
Score = 29.9 bits (64), Expect = 8.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 300 GRAAG-GAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 130
G AG GA++P AG P A P P ++C L R A N + + +
Sbjct: 35 GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94
Query: 129 RRDVEAHLDRGDR 91
++ V+ LD+ R
Sbjct: 95 QKKVKIELDKSAR 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,710,212
Number of Sequences: 237096
Number of extensions: 2182750
Number of successful extensions: 4804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4804
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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