Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0252
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.35 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   7.6  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   7.6  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 9/36 (25%), Positives = 26/36 (72%)
 Frame = -3

Query: 715 RDREIRSRREPKRQDYDLKELKERQKQQLRHKALKK 608
           ++RE+R +RE ++++ + +E ++R+K++   +  +K
Sbjct: 470 KERELREQREREQREKEQREKEQREKEERERQQREK 505



 Score = 27.9 bits (59), Expect = 0.35
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = -3

Query: 724 RQTRDREIRSRREPKRQDYDLKELKERQKQQ 632
           R+ R++  R +RE ++++ + +E +ER++QQ
Sbjct: 472 RELREQREREQREKEQREKEQREKEERERQQ 502



 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -3

Query: 724 RQTRDREIRSRREPKRQDYDLKELKERQKQQLRHKALKKGLDPE 593
           R+  +RE R +RE ++++ + +E KER+++  R +  ++  + E
Sbjct: 493 REKEERE-RQQREKEQREREQRE-KEREREAARERERERERERE 534


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 533 RHTILRRQKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARL 405
           R T +++  +  E DL++ N+D L +V  E+ +Q    +KA+L
Sbjct: 411 RVTRIQKDARQIEQDLQERNRDGLSQV--EQRKQAVETEKAQL 451


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 503  LFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWXGERPGK 375
            LF+    + NK+   K   +  EQFG + +    KW   R  K
Sbjct: 980  LFKDYFSQYNKN--HKYQNDYYEQFGNKNQEEFQKWSTTRIAK 1020


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,978
Number of Sequences: 2352
Number of extensions: 7196
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)