Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0252
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22720.3 68415.m02692 expressed protein 36 0.038
At2g22720.2 68415.m02691 expressed protein 36 0.038
At2g22720.1 68415.m02693 expressed protein 36 0.038
At3g46220.1 68416.m05003 expressed protein 34 0.12
At2g22795.1 68415.m02704 expressed protein 33 0.15
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 31 0.82
At4g11450.1 68417.m01843 expressed protein 31 0.82
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 30 1.9
At3g43800.1 68416.m04681 glutathione S-transferase, putative glu... 29 3.3
At1g07120.1 68414.m00757 expressed protein 29 3.3
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 29 4.4
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 5.8
At4g11990.1 68417.m01908 expressed protein hypothetical protein ... 28 7.6
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 7.6
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPA 570
RP +SGS NSRP+N+ R G +++ QR + ++ +S RP S+ Q P
Sbjct: 276 RPASSGSQMQNSRPQNS---RPASAGSQMQ--QRPASSGSQRPASSGSQRPASSGSQRPG 330
Query: 569 QNSS 558
+++
Sbjct: 331 SSTN 334
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISK----RAKETGLRLK-RAQRKTKAATEAQSSQEGSRPRSAH 585
RP +SGS ++SRP + S+ R +G +++ RA + + S + SRP+++
Sbjct: 234 RPSSSGSKMNHSRPATSGSQMPNSRPASSGSQMQSRAVSGSGRPASSGSQMQNSRPQNSR 293
Query: 584 RQAPAQNSSSVQVREA 537
PA S +Q R A
Sbjct: 294 ---PASAGSQMQQRPA 306
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISK----RAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHR 582
RP +SGS ++SRP ++ SK R +G ++ + R + ++ QS R A
Sbjct: 222 RPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNS-RPASSGSQMQSRAVSGSGRPASS 280
Query: 581 QAPAQNSSSVQVREA 537
+ QNS R A
Sbjct: 281 GSQMQNSRPQNSRPA 295
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPA 570
RP +SGS NSRP+N+ R G +++ QR + ++ +S RP S+ Q P
Sbjct: 379 RPASSGSQMQNSRPQNS---RPASAGSQMQ--QRPASSGSQRPASSGSQRPASSGSQRPG 433
Query: 569 QNSS 558
+++
Sbjct: 434 SSTN 437
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISK----RAKETGLRLK-RAQRKTKAATEAQSSQEGSRPRSAH 585
RP +SGS ++SRP + S+ R +G +++ RA + + S + SRP+++
Sbjct: 337 RPSSSGSKMNHSRPATSGSQMPNSRPASSGSQMQSRAVSGSGRPASSGSQMQNSRPQNSR 396
Query: 584 RQAPAQNSSSVQVREA 537
PA S +Q R A
Sbjct: 397 ---PASAGSQMQQRPA 409
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISK----RAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHR 582
RP +SGS ++SRP ++ SK R +G ++ + R + ++ QS R A
Sbjct: 325 RPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNS-RPASSGSQMQSRAVSGSGRPASS 383
Query: 581 QAPAQNSSSVQVREA 537
+ QNS R A
Sbjct: 384 GSQMQNSRPQNSRPA 398
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPA 570
RP +SGS NSRP+N+ R G +++ QR + ++ +S RP S+ Q P
Sbjct: 47 RPASSGSQMQNSRPQNS---RPASAGSQMQ--QRPASSGSQRPASSGSQRPASSGSQRPG 101
Query: 569 QNSS 558
+++
Sbjct: 102 SSTN 105
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISK----RAKETGLRLK-RAQRKTKAATEAQSSQEGSRPRSAH 585
RP +SGS ++SRP + S+ R +G +++ RA + + S + SRP+++
Sbjct: 5 RPSSSGSKMNHSRPATSGSQMPNSRPASSGSQMQSRAVSGSGRPASSGSQMQNSRPQNSR 64
Query: 584 RQAPAQNSSSVQVREA 537
PA S +Q R A
Sbjct: 65 ---PASAGSQMQQRPA 77
>At3g46220.1 68416.m05003 expressed protein
Length = 530
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -2
Query: 746 PRNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQ 567
P + S S+ S P NT K+ G K A K +E +RP+S Q +
Sbjct: 125 PSSKSSESTESIPANTDKGSKKKKG---KSASTKAATVETVPDDEEDARPKSKRNQKKGR 181
Query: 566 NSSSVQ 549
+SSS Q
Sbjct: 182 DSSSSQ 187
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 33.5 bits (73), Expect = 0.15
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Frame = -2
Query: 743 RNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQN 564
+++GS S+ + +S + + G K ++ K K E SSQE S+ R + ++
Sbjct: 407 KSTGSGDGGSQETSEVSSQEESKG---KESETKDK---EESSSQEESKDRETETKEKEES 460
Query: 563 SSSVQVR----EACRHTILRRQKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKW 396
SS + EA Q+K + + EK+ FLE+ +E+ ++ ++++ +
Sbjct: 461 SSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEET-KEKEDETKEKEESSSQEK 519
Query: 395 XGERPGKKKGELES 354
E+ + K ES
Sbjct: 520 TEEKETETKDNEES 533
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 742 GTLGVHRQTRDREIRSRREPKRQDYDLKELKERQKQQLRHKALKK 608
G+ G + ++ + R EP+ + +L E +ERQK++ + KALK+
Sbjct: 190 GSSGEDTEMKEADERKEPEPEMEPMELTE-EERQKKERKEKALKE 233
>At4g11450.1 68417.m01843 expressed protein
Length = 694
Score = 31.1 bits (67), Expect = 0.82
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = -2
Query: 743 RNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQN 564
+NS + S R N++S A +T ++ + ++T + + ++S G+ P SA P
Sbjct: 403 KNSVKSDSEIR-NNSMSGDASDT-MKQRSQPKRTSQSYDLEASN-GTNPWSAANLHPDLE 459
Query: 563 SSSVQVREACRHTILRRQK-KLFEGD---LEKLNKDFLEKVWQERAEQFGGRQKARL 405
+++ +++ TI +R+ K GD +EK N L + +E+ E FG R +L
Sbjct: 460 IAAIIIQD----TIEKRESLKYRRGDKRLMEKTNILGLSPIEEEKKELFGSRSLEKL 512
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 730 VHRQTRDREIRSRREPKRQDYDLKELKERQKQQLRHKALK-KGLDPEAL 587
+ +RDRE +E K ++ ++ LKE +++L H ++ K LD E L
Sbjct: 666 LENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERL 714
>At3g43800.1 68416.m04681 glutathione S-transferase, putative
glutathione transferase, papaya, PIR:T09781
Length = 227
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 110 KLMDWLQNCRTRPA 151
KLMDW++ C TRPA
Sbjct: 186 KLMDWIRKCLTRPA 199
>At1g07120.1 68414.m00757 expressed protein
Length = 392
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 743 RNSGSASSNSRPRNTISK-RAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQ 567
RN N R +++ RA+ + L+ +RK+ + QSS +GS ++ +AP
Sbjct: 24 RNDKLEKENHELRQEVARLRAQVSNLKSHENERKSMLWKKLQSSYDGSNTDGSNLKAPES 83
Query: 566 NSSSVQVRE 540
S+ + +E
Sbjct: 84 VKSNTKGQE 92
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = -2
Query: 737 SGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSS 558
S S + +R T A++TG A KT+ A++ +RP +A +
Sbjct: 271 SPSTKAINRAGETPLDTAEKTGHPQIAAVLKTRGVPSAKAINNTTRPNAARELKQTVSDI 330
Query: 557 SVQVREACRHTILRRQKKLFEGDLEKLNKDFLE 459
+V H R +K +G +++NK +E
Sbjct: 331 KHEVHHQLEHA--RETRKRVQGIAKRINKMHVE 361
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -3
Query: 733 GVHRQTRDREIRSRREPKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVA 554
G R +RD + R R K +DY+ E + + R + + +PE G +
Sbjct: 335 GRDRTSRDHD-RDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRGYYEDDQGDT 393
Query: 553 SKYERRVDTRSYDD 512
+Y R D DD
Sbjct: 394 DRYSHRYDKMEEDD 407
>At4g11990.1 68417.m01908 expressed protein hypothetical protein
F7H19.40 - Arabidopsis thaliana, PID:e1310054
Length = 501
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 706 EIRSRREPKRQDYDLKELKER-QKQQLRHKALKKGLDPEAL 587
EI+S + K L+++ E Q+ L HKALKK LD +L
Sbjct: 200 EIQSAKRQKLDGGLLRKVAEAAQETNLVHKALKKDLDKNSL 240
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = -2
Query: 749 RPRNSGSASSNSRPRNTISKRAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPA 570
R R+ + S SR R+ R++ R + + K+ + A+S+ PRS R
Sbjct: 206 RGRSYSKSRSRSRGRSVSRSRSRSRS-RSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSP 264
Query: 569 QNSSSVQVREACRHTIL 519
+ +V+ + H I+
Sbjct: 265 RRWITVETLDHLDHNII 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,314
Number of Sequences: 28952
Number of extensions: 162732
Number of successful extensions: 776
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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