Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0251
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 111 1e-25
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.1
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 2.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.4
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 4.5
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 4.5
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 4.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 4.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.8
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 111 bits (266), Expect = 1e-25
Identities = 64/132 (48%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Frame = -2
Query: 652 YQLIHQGTRLIPWISSLQPKLTIQFRMVFTTRSSS*FLGSN-RSPDEGQTADEAKAELEK 476
+QLIHQGT+LIP L P I+ L SN + E + AE++
Sbjct: 397 FQLIHQGTKLIP-ADFLIP---IESHNPIDNNKHHRMLFSNFAAQTEALMLGKTPAEVKA 452
Query: 475 SGMAPEAIDKILPHKVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYD 296
G D+I+PHK F GNRP+NSI+ KKITP +LGALIA YE FT+G +W+INS+D
Sbjct: 453 EGTP----DEIVPHKTFVGNRPSNSIIAKKITPASLGALIAFYEWVTFTEGAVWNINSFD 508
Query: 295 QWGVELGKQLAK 260
Q+GVELGK+LAK
Sbjct: 509 QFGVELGKKLAK 520
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 248 ELQGTAAVTGHDASTNGLINFLKKNF 171
+L+ V HD+STNGLIN K F
Sbjct: 525 QLETKGDVENHDSSTNGLINLFKNGF 550
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 EVNESIRGSVVAGHS--CSPLQLRLIALANCLPSSTP 290
+VN I V G S SP RL+A NC PSSTP
Sbjct: 36 DVNAPISPVVDEGKSELVSPTLERLVAPFNCSPSSTP 72
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 222 GHSCSPLQLRLIALANCLPSSTPH*SYELISQITPCVKIL 341
GH P+ + + AL S PH I + T CVK L
Sbjct: 88 GHPSPPVHIYMSALIKVCKKSKPHLQTHCIKRKTYCVKHL 127
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 426 NTLCGRILSIASGAIPDFSSSALASSAVCPSS 521
+++ + ++S A+ D ++SA ASS+V P+S
Sbjct: 99 SSVAASVTPVSSSAVVDSATSAAASSSVIPTS 130
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 385 ITPFTLGALIAMYEHKIFTQGVIWDINSYD 296
+T TLG LI M H T GV +++N Y+
Sbjct: 179 LTVATLGDLIGMVGHLNDTSGVDFNLNEYN 208
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 661 ARLYQLIHQGTRLIPWISSLQPKLTIQFRMVFTTRSSS*FLGSNRSPDEGQTADEAKAE 485
A+ Y+++ I W L+ + + F M RS + N SPD+ + A+E+ AE
Sbjct: 431 AKAYEMLTLICAKIGWDELLRVRSAV-FVMEEEYRSLNDITEGNASPDQNEVAEESVAE 488
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 695 PIVWASPGPTDSTPLPAHTPGNQIDSMDFIAPAQTHNPISN 573
P+V + P T + P P++ P + S A + NP ++
Sbjct: 95 PVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAH 135
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 297 SYELISQITPCVKILCSYMAISAPKVNGVIFFRTIEFVG 413
+Y L+++ PC C++ IS P V+ F EFVG
Sbjct: 277 TYNLLNKDKPCSMDPCNFDGISIPPVD----FANTEFVG 311
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 508 TADEAKAELEKSGMAPEAIDKI 443
T +EA LEKSG+AP+ + +I
Sbjct: 29 TGEEAVPFLEKSGLAPQVLGQI 50
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 695 PIVWASPGPTDSTPLPAHTPGNQI 624
P + S GP+ TP +H P QI
Sbjct: 242 PTPFGSGGPSKPTPFESHGPAKQI 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,609
Number of Sequences: 5004
Number of extensions: 63424
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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